Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017674.1 Corchorus olitorius cultivar O-4 contig17707, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7762
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31


Found at i:4660 original size:20 final size:21

Alignment explanation


    Indices: 4630--4668  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 21

       4620 TGAAGTTTCT

                          *      
       4630 GGGGCTACCCGGGGGCGGGTA
          1 GGGGCTACCCGGGGCCGGGTA

                               
       4651 GGGG-TACCCGGGGCCGGG
          1 GGGGCTACCCGGGGCCGGG

       4669 CACCATCAGG


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20   13  0.76
  21    4  0.24

ACGTcount: A:0.08, C:0.26, G:0.59, T:0.08


Consensus pattern (21 bp):   
GGGGCTACCCGGGGCCGGGTA
Done.