Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017676.1 Corchorus olitorius cultivar O-4 contig17709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2567
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30


Found at i:595 original size:21 final size:21

Alignment explanation


    Indices: 569--615  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        559 GGAATGATGA

                   *    **       
        569 TGGCACGGGCATGGCCGGTGG
          1 TGGCACGAGCATAACCGGTGG

                      *          
        590 TGGCACGAGCTTAACCGGTGG
          1 TGGCACGAGCATAACCGGTGG

                 
        611 TGGCA
          1 TGGCA

        616 TGGTAATGGG


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.15, C:0.23, G:0.45, T:0.17


Consensus pattern (21 bp):   
TGGCACGAGCATAACCGGTGG
Done.