Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017679.1 Corchorus olitorius cultivar O-4 contig17712, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50550

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1581--1651
21
3.4
21
88
3
108
29
26
15
28
1.96
7355--7428
29
2.6
28
85
4
96
16
18
27
37
1.92
9623--9664
17
2.4
18
81
18
54
47
4
40
7
1.52
12149--12188
17
2.4
17
83
8
55
70
7
15
7
1.33
19818--19894
28
2.8
28
86
2
102
22
16
22
38
1.93
19872--19924
26
2.0
26
92
0
88
18
13
28
39
1.88
25150--25310
78
2.1
78
100
0
322
28
18
29
22
1.98
30521--30554
17
1.9
18
88
5
52
32
8
2
55
1.45
32015--32061
21
2.2
21
85
7
60
38
12
8
40
1.74
37012--37063
27
1.9
27
100
0
104
40
9
26
23
1.85
45614--45649
17
2.1
18
94
5
65
44
11
0
44
1.39
46207--46296
43
2.1
43
87
4
128
32
13
13
41
1.83
47702--47741
20
2.0
20
95
0
71
35
22
20
22
1.96
47826--48071
106
2.3
107
91
0
395
41
8
7
42
1.64
47826--48106
106
2.6
106
86
5
372
41
9
6
42
1.63
49051--49117
26
2.6
26
100
0
134
35
8
5
49
1.59

Tables:   1

The End!