genome.fa.s17680.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017680.1 Corchorus olitorius cultivar O-4 contig17713, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  245264

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1697--1730	17	2.1	17	88	5	52	52	2	11	32	1.53
5314--5357	13	3.5	13	84	15	65	29	0	9	61	1.27
5305--5357	24	2.2	25	89	3	81	28	1	7	62	1.33
13731--14186	197	2.3	199	91	2	738	34	13	17	33	1.90
17930--17993	26	2.5	26	78	0	74	45	7	17	29	1.76
18636--19261	134	4.7	133	84	3	729	36	10	12	39	1.79
18646--19133	67	7.3	65	64	15	179	35	10	13	40	1.79
25183--25222	20	2.0	20	95	0	71	57	12	5	25	1.55
30096--30602	130	3.9	130	87	2	680	38	12	14	35	1.84
31688--31792	21	5.1	21	70	11	92	51	11	2	34	1.53
31650--31792	60	2.4	60	100	0	286	49	11	4	34	1.58
39317--39351	18	1.9	18	94	0	61	42	0	57	0	0.99
40370--40396	12	2.2	12	100	0	54	14	0	0	85	0.61
41739--41763	2	12.5	2	100	0	50	52	0	48	0	1.00
44740--44766	2	13.5	2	100	0	54	51	0	48	0	1.00
50279--50454	88	2.0	89	87	3	257	53	3	11	30	1.54
51405--51472	34	2.0	34	100	0	136	26	14	17	41	1.88
51937--51994	19	2.9	19	87	5	80	29	22	12	36	1.90
54012--54152	49	2.9	47	80	11	160	29	16	5	48	1.68
54686--54773	18	4.9	18	92	0	140	22	42	23	11	1.86
56002--56099	15	6.5	15	74	15	78	35	26	25	12	1.91
55996--56099	30	3.5	30	84	7	140	36	25	25	12	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55996--56099	45	2.3	44	82	8	138	36	25	25	12	1.91
58690--58829	49	2.9	47	84	6	158	29	15	5	50	1.67
59499--59538	21	1.9	21	94	0	71	25	37	22	15	1.93
59521--59624	50	2.1	50	94	0	181	37	23	22	17	1.94
59530--59637	50	2.3	46	84	7	119	36	21	25	17	1.95
60212--60258	26	1.9	23	87	12	67	27	27	4	40	1.75
69401--69528	50	2.6	50	88	2	186	37	22	22	17	1.94
69510--69553	22	2.0	23	86	4	63	25	31	22	20	1.98
73213--73271	25	2.4	25	100	0	118	30	11	6	50	1.65
73248--73352	49	2.2	47	86	6	140	30	13	7	48	1.70
75558--75599	21	2.0	21	86	9	59	35	9	26	28	1.88
76651--76813	66	2.5	66	93	0	281	26	9	21	42	1.82
76651--76864	33	6.5	32	77	7	171	27	9	21	42	1.83
76651--76861	66	3.2	66	86	4	212	27	9	20	42	1.83
79633--79669	15	2.5	15	100	0	74	43	16	24	16	1.87
102753--102869	49	2.4	48	85	5	155	25	16	5	52	1.63
103410--103438	15	1.9	15	100	0	58	34	27	3	34	1.74
106566--106667	51	2.0	50	83	9	127	21	24	13	40	1.90
108648--108903	123	2.0	128	90	6	414	38	10	1	49	1.45
108889--108927	14	2.9	13	80	3	51	41	2	2	53	1.28
111891--111938	24	2.0	24	88	8	71	6	12	4	77	1.11
114788--114824	19	1.9	19	88	0	56	16	5	27	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115441--115481	20	2.0	20	95	0	73	39	24	9	26	1.86
126994--127049	27	2.1	27	100	0	112	60	17	3	17	1.50
128969--129003	18	1.9	18	88	0	52	34	11	11	42	1.77
129543--129592	18	2.8	18	96	0	91	12	20	28	40	1.87
133238--133298	32	1.9	32	89	0	95	24	19	8	47	1.76
141510--141844	161	2.1	161	97	0	636	36	21	14	26	1.92
154543--154577	15	2.3	15	95	0	61	25	11	42	20	1.85
158162--158385	111	2.0	111	96	0	412	32	16	23	28	1.96
158276--158421	73	2.0	73	89	2	222	30	16	24	28	1.96
162148--162240	31	3.0	31	87	3	134	25	18	4	51	1.64
162148--162238	30	3.0	30	88	1	128	26	17	4	51	1.64
162308--162482	85	2.1	85	89	4	264	36	8	4	51	1.51
174543--174568	12	2.2	12	100	0	52	53	23	7	15	1.67
191877--191911	18	1.9	18	100	0	70	11	34	20	34	1.88
192662--192730	21	3.3	21	85	0	102	40	10	20	28	1.85
197104--197134	10	3.2	10	90	9	55	90	0	9	0	0.46
197104--197150	22	2.2	21	84	3	58	82	0	12	4	0.80
197105--197130	9	2.9	9	100	0	52	92	0	7	0	0.39
211974--212020	22	2.1	22	84	7	60	27	12	21	38	1.90
213789--213816	2	14.0	2	100	0	56	50	0	0	50	1.00
228094--228155	29	2.2	28	88	2	88	19	14	16	50	1.79
231810--231864	28	1.9	29	81	3	67	32	7	14	45	1.72

Tables:   1

The End!