Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017681.1 Corchorus olitorius cultivar O-4 contig17714, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44107

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7431--7481
19
2.7
18
76
8
57
45
0
3
50
1.20
8791--8892
51
2.0
50
80
12
111
22
22
13
41
1.89
9017--9065
24
2.0
24
88
0
71
28
22
12
36
1.90
9427--9469
22
1.9
23
90
4
70
46
4
11
37
1.61
14140--14181
2
20.5
2
85
4
57
47
2
4
45
1.36
21464--23804
328
7.1
323
76
9
1886
36
15
14
33
1.88
24680--24732
27
2.0
27
92
0
88
35
13
15
35
1.86
26737--26865
15
8.6
14
85
3
132
22
31
15
31
1.95
26742--26865
45
2.8
44
81
9
151
21
32
16
29
1.95
29981--30028
21
2.3
21
82
7
62
39
0
47
12
1.41
31269--31362
45
2.2
43
86
7
129
36
22
5
36
1.77
33081--33117
18
2.0
19
94
5
67
64
10
13
10
1.49
40602--41178
314
1.8
313
82
4
743
37
15
14
32
1.87
40437--42246
328
5.6
328
76
9
1265
37
14
14
33
1.86
42583--42612
15
1.9
16
93
6
53
53
3
0
43
1.17

Tables:   1

The End!