genome.fa.s17683.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017683.1 Corchorus olitorius cultivar O-4 contig17716, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58017

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1019	329	3.1	326	80	8	1037	37	14	14	33	1.86
1380--1409	15	1.9	16	93	6	53	53	3	0	43	1.17
3169--3220	26	2.0	26	92	0	86	42	5	9	42	1.61
4958--6301	335	4.1	327	79	7	1336	34	14	15	36	1.87
7040--8478	331	4.3	329	75	11	1078	33	13	16	36	1.87
10087--10185	32	3.1	32	88	0	135	18	10	32	39	1.84
10329--10366	19	2.0	20	89	5	60	36	5	2	55	1.37
15647--15861	106	2.0	106	98	0	412	43	17	9	29	1.81
19719--20257	284	1.9	284	94	1	947	39	16	10	33	1.83
22709--22746	20	1.9	20	100	0	76	50	26	7	15	1.72
25143--25167	13	1.9	13	100	0	50	16	48	16	20	1.82
25455--25515	18	3.4	18	90	4	97	6	27	19	45	1.75
25428--25562	65	2.1	64	86	4	182	6	25	19	48	1.73
25481--25611	48	2.8	48	87	3	185	6	25	20	47	1.75
25572--25610	18	2.2	18	86	9	53	5	28	20	46	1.72
28688--31367	336	8.2	336	73	13	967	36	15	14	33	1.88
31736--31765	15	1.9	16	93	6	53	53	3	0	43	1.17
31999--32053	25	2.2	25	87	3	76	29	3	18	49	1.64
39066--39135	36	1.9	36	97	0	131	38	11	17	32	1.85
48269--48348	39	2.1	39	100	0	160	36	7	31	25	1.84
49526--49555	12	2.5	12	94	0	51	20	20	33	26	1.97
54262--54290	12	2.4	12	100	0	58	27	37	6	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56394--56518	48	2.6	49	80	8	125	52	6	16	25	1.67
56429--56536	48	2.3	46	84	9	146	54	4	16	24	1.61

Tables:   1

The End!