Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017684.1 Corchorus olitorius cultivar O-4 contig17717, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63965

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
931--969
2
19.5
2
100
0
78
0
48
0
51
1.00
2617--2771
30
4.6
35
71
18
141
23
30
12
33
1.91
2637--2760
30
3.9
30
82
12
158
21
31
12
33
1.91
2617--2771
66
2.3
66
96
0
283
23
30
12
33
1.91
10919--11329
49
8.0
49
85
11
556
44
17
15
22
1.86
11028--11329
108
2.8
108
96
0
561
42
18
15
23
1.88
15543--15616
29
2.5
30
82
4
96
37
17
27
17
1.92
20632--20661
15
2.0
15
93
0
51
63
13
23
0
1.29
23251--23282
13
2.5
13
94
0
55
12
50
6
31
1.65
23380--23457
41
1.9
41
89
0
120
26
14
17
41
1.88
28157--28200
2
21.5
2
86
4
61
47
6
0
45
1.29
28198--28228
4
7.8
4
100
0
62
25
0
22
51
1.48
29272--29302
2
15.5
2
100
0
62
51
0
0
48
1.00
35549--35604
18
3.1
18
89
7
87
26
23
26
23
2.00

Tables:   1

The End!