Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017687.1 Corchorus olitorius cultivar O-4 contig17720, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51339

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--95
45
2.1
45
96
0
172
37
24
28
9
1.86
225--304
39
2.0
40
92
2
135
17
21
30
31
1.96
786--818
13
2.6
13
90
4
50
84
3
12
0
0.72
2525--2651
37
3.4
37
91
4
202
37
24
7
30
1.84
2546--2685
24
5.7
24
73
15
92
31
25
9
34
1.87
2634--2689
26
2.2
26
83
6
69
28
25
8
37
1.86
5503--5567
30
2.2
30
91
0
103
13
13
16
55
1.70
5916--6089
87
2.0
88
97
1
332
44
6
22
26
1.78
7754--7808
16
3.5
16
69
14
51
7
21
32
38
1.81
7928--7979
25
2.1
24
85
3
68
30
7
3
57
1.45
9502--9526
4
6.2
4
100
0
50
24
0
0
76
0.80
9543--9653
3
37.0
3
98
0
213
34
0
0
65
0.93
9936--10054
32
3.7
32
80
10
125
15
36
38
10
1.81
9936--10043
33
3.4
31
80
13
128
15
36
38
9
1.80
10083--10120
3
12.7
3
100
0
76
31
0
0
68
0.90
10543--11007
240
1.9
240
94
0
824
20
24
23
30
1.99
16947--17050
53
1.9
54
96
1
192
23
3
15
57
1.54
17382--17419
21
1.9
20
84
10
51
26
23
2
47
1.65
17878--17946
2
36.5
2
75
16
58
47
2
1
47
1.25
17878--17958
27
3.1
26
77
13
87
48
2
1
48
1.23
17879--17946
31
2.2
31
81
5
75
47
2
1
48
1.26
19418--19472
25
2.1
27
90
6
87
27
12
7
52
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22876--23023
74
2.0
74
98
0
287
41
20
10
28
1.84
23813--23854
2
21.5
2
85
4
59
47
2
0
50
1.14
24149--24232
41
2.0
42
93
2
143
28
14
10
46
1.78
25647--25672
2
13.0
2
100
0
52
50
0
0
50
1.00
27042--27079
16
2.5
15
84
16
51
15
7
2
73
1.17
27105--27300
96
2.1
93
92
2
329
33
1
16
48
1.56
28120--28185
31
2.2
31
86
2
89
36
13
22
27
1.92
28309--28508
83
2.4
84
88
0
285
30
12
11
46
1.77
30594--30873
103
2.7
106
80
9
324
40
8
9
41
1.68
36026--36253
103
2.2
104
88
2
332
39
7
10
42
1.67
38054--38094
19
2.0
21
86
9
59
2
4
19
73
1.13
38973--39038
30
2.2
30
100
0
132
22
28
19
28
1.98
43217--43245
14
2.0
15
93
6
51
17
13
13
55
1.70

Tables:   1

The End!