genome.fa.s17688.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017688.1 Corchorus olitorius cultivar O-4 contig17721, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54627

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2147--2171	13	1.9	13	100	0	50	4	32	0	64	1.12
15542--15647	27	3.9	27	86	0	131	18	16	34	30	1.93
15663--15808	30	4.6	30	79	14	166	19	7	50	21	1.72
15696--15721	9	2.9	9	100	0	52	19	0	69	11	1.18
15666--15778	39	3.1	39	71	21	136	20	7	52	20	1.69
15705--15810	30	3.5	30	90	0	167	18	6	51	22	1.69
15767--15907	48	2.8	50	82	11	178	17	9	50	22	1.74
15777--15853	24	3.2	24	63	14	59	16	9	50	23	1.74
15768--15907	54	2.7	53	84	9	182	17	9	50	22	1.74
15870--15942	30	2.3	32	90	6	114	20	15	47	16	1.82
27650--27690	21	2.0	21	86	9	59	41	4	9	43	1.59
27972--28009	15	2.4	16	91	4	60	44	10	0	44	1.38
36125--36171	21	2.2	21	84	0	58	44	4	21	29	1.71
36146--36296	44	3.4	44	79	5	137	39	7	12	39	1.72
36138--36296	22	7.2	22	74	10	114	39	8	13	38	1.74
36569--36734	31	5.5	31	66	15	114	36	16	16	30	1.91
36572--36794	60	3.7	60	87	1	313	37	15	17	30	1.90
36600--36765	29	5.6	29	68	9	111	34	15	16	32	1.91
36572--36788	120	1.8	120	89	2	346	36	15	16	31	1.90
36825--36999	31	5.8	31	69	15	123	28	18	18	35	1.94
36866--36962	29	3.3	29	71	16	99	30	18	16	34	1.93
36828--36993	60	2.8	60	92	0	269	27	18	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38006--38069	33	1.9	33	96	0	119	28	18	20	32	1.96
43196--43285	1	90.0	1	75	0	81	87	11	1	0	0.59
43198--43285	14	6.4	14	90	6	135	87	11	1	0	0.60
43199--43285	27	3.2	27	93	4	140	87	11	1	0	0.60
43196--43285	34	2.7	33	89	8	137	87	11	1	0	0.59
44048--44172	44	2.8	44	83	0	151	40	13	12	33	1.81
44048--44193	22	6.5	22	72	6	96	39	13	15	32	1.85
44217--44274	22	2.6	23	81	13	68	41	3	22	32	1.71
44303--44546	22	11.1	22	75	10	158	31	11	18	39	1.85
44634--45033	167	2.4	166	78	5	403	33	19	17	30	1.94
46275--46860	22	26.4	22	67	13	175	36	11	15	36	1.84
46293--46451	68	2.4	65	81	10	169	39	11	13	34	1.82
53016--53127	53	2.1	53	81	6	129	54	12	9	23	1.67
53609--53693	41	2.1	41	84	8	111	54	20	11	14	1.71

Tables:   1

The End!