Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001769.1 Corchorus olitorius cultivar O-4 contig01769, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1005
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34


Found at i:581 original size:33 final size:33

Alignment explanation


    Indices: 473--584  Score: 122
    Period size: 33  Copynumber: 3.4  Consensus size: 33

        463 AAGAGTAATT

                           *         *        
        473 CTAAATCTGTTTTAGATGTTGTTTGCGAT-AATA
          1 CTAAATCTGTTTTAGGTGTTGTTTGTGATGAA-A

                 *  **                      * 
        506 CTAAACCTAATTT-GAGTGTTGTTTGTGATGACA
          1 CTAAATCTGTTTTAG-GTGTTGTTTGTGATGAAA

                                             
        539 CTAAATCTGTTTTAGGTGTTGTTTGTGATGAAA
          1 CTAAATCTGTTTTAGGTGTTGTTTGTGATGAAA

                          
        572 C-AAATTCTGTTTT
          1 CTAAA-TCTGTTTT

        585 GGATGCCAAT


Statistics
Matches: 65,  Mismatches: 10, Indels: 8
        0.78            0.12        0.10

Matches are distributed among these distances:
  32    4  0.06
  33   59  0.91
  34    2  0.03

ACGTcount: A:0.26, C:0.10, G:0.20, T:0.45


Consensus pattern (33 bp):   
CTAAATCTGTTTTAGGTGTTGTTTGTGATGAAA
Done.