Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017691.1 Corchorus olitorius cultivar O-4 contig17724, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100485

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
909--955
22
2.1
22
84
7
60
61
2
12
23
1.42
834--1016
91
2.0
93
90
4
291
52
2
12
33
1.50
1859--1901
6
7.3
6
92
7
63
83
0
16
0
0.64
7538--8006
245
1.9
245
92
0
796
28
15
15
40
1.88
9410--9453
22
2.0
22
95
0
79
40
15
13
29
1.86
15672--15697
2
13.0
2
100
0
52
50
0
0
50
1.00
19065--19121
22
2.6
21
78
8
60
47
0
5
47
1.24
20392--20416
13
1.9
13
100
0
50
52
16
16
16
1.76
29371--29418
21
2.3
21
88
0
69
39
10
20
29
1.86
30951--30990
11
3.5
11
80
6
53
42
5
15
37
1.68
30945--30992
23
2.1
23
100
0
96
41
10
12
35
1.77
31300--31367
22
3.0
23
73
18
72
39
2
0
57
1.14
32927--32956
15
1.9
16
93
6
53
0
13
10
76
1.01
35671--35695
1
25.0
1
100
0
50
100
0
0
0
0.00
41920--41975
19
2.9
19
97
0
103
33
14
35
16
1.88
47069--47106
5
7.8
5
91
8
53
0
0
15
84
0.63
57606--57689
28
3.0
28
100
0
168
17
7
25
50
1.72
58236--58260
6
4.2
6
100
0
50
20
16
0
64
1.30
61886--61918
12
2.9
12
91
8
52
78
0
21
0
0.75
66048--66106
19
3.0
19
76
9
64
38
18
5
37
1.73
66084--66231
73
2.0
73
89
0
224
31
25
16
27
1.96
92824--92864
3
13.7
3
100
0
82
0
31
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97810--97881
35
2.1
35
100
0
144
26
19
26
27
1.99
99062--99109
15
2.9
16
84
12
53
41
4
2
52
1.32
99059--99109
18
2.8
17
85
8
57
41
3
1
52
1.31
100309--100350
22
1.9
22
85
0
57
40
11
4
42
1.63

Tables:   1

The End!