Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017693.1 Corchorus olitorius cultivar O-4 contig17726, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58951
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:5168 original size:15 final size:15
Alignment explanation
Indices: 5148--5177 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
5138 TCTAACTTCC
5148 AAACTAATAGGCAAA
1 AAACTAATAGGCAAA
5163 AAACTAATAGGCAAA
1 AAACTAATAGGCAAA
5178 GTTGATCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.13, G:0.13, T:0.13
Consensus pattern (15 bp):
AAACTAATAGGCAAA
Found at i:8079 original size:12 final size:12
Alignment explanation
Indices: 8062--8086 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8052 CTAAAGTTTC
8062 CAGAAAGTCCCG
1 CAGAAAGTCCCG
8074 CAGAAAGTCCCG
1 CAGAAAGTCCCG
8086 C
1 C
8087 GCACCCAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.36, G:0.24, T:0.08
Consensus pattern (12 bp):
CAGAAAGTCCCG
Found at i:12201 original size:18 final size:19
Alignment explanation
Indices: 12158--12206 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
12148 TAATAATCAC
12158 ATCTGTACAGATCTAATATA
1 ATCTGTACAG-TCTAATATA
* *
12178 ATCTGTACAGTGTAATCT-
1 ATCTGTACAGTCTAATATA
12196 ATCTGTACAGT
1 ATCTGTACAGT
12207 TGCTAAACAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 11 0.41
19 6 0.22
20 10 0.37
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (19 bp):
ATCTGTACAGTCTAATATA
Found at i:18907 original size:21 final size:19
Alignment explanation
Indices: 18862--18919 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
18852 CTGTTTAGCA
18862 ACTGTACAGATGAGATTAC
1 ACTGTACAGATGAGATTAC
* *
18881 ACTGTACAGATTAGATTAGGT
1 ACTGTACAGATGAGATTA--C
18902 ACTGTACAGATGAGATTA
1 ACTGTACAGATGAGATTA
18920 TTAGAGCAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.50
21 17 0.50
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29
Consensus pattern (19 bp):
ACTGTACAGATGAGATTAC
Found at i:36673 original size:46 final size:46
Alignment explanation
Indices: 36616--36792 Score: 300
Period size: 46 Copynumber: 3.8 Consensus size: 46
36606 ATTCCTTCCA
36616 ATGTGCTTCTGGGGAATCAAACTTGTGTTCTCATCTTTCCTTCTGG
1 ATGTGCTTCTGGGGAATCAAACTTGTGTTCTCATCTTTCCTTCTGG
*
36662 ATGTGCTTCTGGGGAATCAAATTTGTGTTCTCATCTTTCCTTCTGG
1 ATGTGCTTCTGGGGAATCAAACTTGTGTTCTCATCTTTCCTTCTGG
*
36708 ATGTGCTTCTGGGGAATCAAACTTGTGTTCTCATCTTTCCTTCCGG
1 ATGTGCTTCTGGGGAATCAAACTTGTGTTCTCATCTTTCCTTCTGG
* * *
36754 ATGTGCTTCTGGGAGGATTAAACTTGTGTTCTTATCTTT
1 ATGTGCTTCTGGG-GAATCAAACTTGTGTTCTCATCTTT
36793 GGGTCATTGA
Statistics
Matches: 124, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
46 102 0.82
47 22 0.18
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (46 bp):
ATGTGCTTCTGGGGAATCAAACTTGTGTTCTCATCTTTCCTTCTGG
Found at i:36915 original size:70 final size:70
Alignment explanation
Indices: 36802--36942 Score: 255
Period size: 70 Copynumber: 2.0 Consensus size: 70
36792 TGGGTCATTG
36802 AAACCCGGAATAATGTCTTTTCATTCTAATCAATTCCCCTTTATTAGTTAATTATAATACTTGCG
1 AAACCCGGAATAATGTCTTTTCATTCTAATCAATTCCCCTTTATTAGTTAATTATAATACTTGCG
36867 AAGGA
66 AAGGA
* * *
36872 AAACCCGGAATGATGTCTTTTCATTCTAATCAATTCCCCTTTATTAGTTAATTGTATTACTTGCG
1 AAACCCGGAATAATGTCTTTTCATTCTAATCAATTCCCCTTTATTAGTTAATTATAATACTTGCG
36937 AAGGA
66 AAGGA
36942 A
1 A
36943 CGGGGTTGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (70 bp):
AAACCCGGAATAATGTCTTTTCATTCTAATCAATTCCCCTTTATTAGTTAATTATAATACTTGCG
AAGGA
Found at i:42877 original size:45 final size:45
Alignment explanation
Indices: 42820--43378 Score: 705
Period size: 45 Copynumber: 12.5 Consensus size: 45
42810 GTCTGATCTG
* * * * *
42820 CGGAAAGTATGTGCACTCCATATCAGTGAATCTCGAAGATATCAC
1 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
* *
42865 CGGAAAACATGTGCGCTCCATATCAGTTAAACTCGAAGATA----
1 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
*
42906 CGGAAAGCATGTGCACTCCATATCAGTGAAACTCGAAGATACCTC
1 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
* * * * *
42951 CGGAGAGCATGTGCGCTCCATATCAATTAAACTC-AAAATTATCTC
1 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGA-TACCTC
42996 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
1 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
* * * * * * *
43041 CAGAGAGCATGTGCGCTCCATATCAATTAAACTCAAAAATATCTC
1 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
43086 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
1 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
* * * * * *
43131 CGGAGAGCATGTGCGCTCCATATCAATTAAACTCAAAAATATCTC
1 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
*
43176 CGGAAAGCATGTGCGCTCCATATTAGTGAAACTCGAAGATACCTC
1 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
* * *
43221 CGGAAAGCATGTGCGCTCCATATCAATTAAACTCGAAGATAGCTC
1 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
* * * * *
43266 TGGAAAGCATGTGCGTTCTATATCAGTAAAACTTGAAGATACCTC
1 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
* * * *
43311 CGGAAAGCATGTGCGCTCCATATCAATTAAACTTGAAGAAACCTC
1 CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
* *
43356 TGGAAAGCATGTGCGATCCATAT
1 CGGAAAGCATGTGCGCTCCATAT
43379 ATCAAATTAT
Statistics
Matches: 443, Mismatches: 65, Indels: 12
0.85 0.12 0.02
Matches are distributed among these distances:
41 38 0.09
44 3 0.01
45 399 0.90
46 3 0.01
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (45 bp):
CGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTC
Found at i:43032 original size:90 final size:89
Alignment explanation
Indices: 42815--43378 Score: 796
Period size: 90 Copynumber: 6.3 Consensus size: 89
42805 CACAAGTCTG
* * * * * * *
42815 ATCTGCGGAAAGTATGTGCACTCCATATCAGTGAATCTCGAAGATATCACCGGAAAACATGTGCG
1 ATCTCCGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTCCGGAAAGCATGTGCG
* *
42880 CTCCATATCAGTTAAACTCGAAGAT
66 CTCCATATCAATTAAACTC-AAAAT
* *
42905 A----CGGAAAGCATGTGCACTCCATATCAGTGAAACTCGAAGATACCTCCGGAGAGCATGTGCG
1 ATCTCCGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTCCGGAAAGCATGTGCG
42966 CTCCATATCAATTAAACTCAAAATT
66 CTCCATATCAATTAAACTCAAAA-T
* *
42991 ATCTCCGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTCCAGAGAGCATGTGCG
1 ATCTCCGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTCCGGAAAGCATGTGCG
43056 CTCCATATCAATTAAACTCAAAAAT
66 CTCCATATCAATTAAACTC-AAAAT
*
43081 ATCTCCGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTCCGGAGAGCATGTGCG
1 ATCTCCGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTCCGGAAAGCATGTGCG
43146 CTCCATATCAATTAAACTCAAAAAT
66 CTCCATATCAATTAAACTC-AAAAT
*
43171 ATCTCCGGAAAGCATGTGCGCTCCATATTAGTGAAACTCGAAGATACCTCCGGAAAGCATGTGCG
1 ATCTCCGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTCCGGAAAGCATGTGCG
*
43236 CTCCATATCAATTAAACTCGAAGAT
66 CTCCATATCAATTAAACTC-AAAAT
* * * * * *
43261 AGCTCTGGAAAGCATGTGCGTTCTATATCAGTAAAACTTGAAGATACCTCCGGAAAGCATGTGCG
1 ATCTCCGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTCCGGAAAGCATGTGCG
*
43326 CTCCATATCAATTAAACTTGAAGAA-
66 CTCCATATCAATTAAAC-TCAA-AAT
* * *
43351 ACCTCTGGAAAGCATGTGCGATCCATAT
1 ATCTCCGGAAAGCATGTGCGCTCCATAT
43379 ATCAAATTAT
Statistics
Matches: 439, Mismatches: 27, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
85 3 0.01
86 74 0.17
90 356 0.81
91 6 0.01
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (89 bp):
ATCTCCGGAAAGCATGTGCGCTCCATATCAGTGAAACTCGAAGATACCTCCGGAAAGCATGTGCG
CTCCATATCAATTAAACTCAAAAT
Found at i:47054 original size:2 final size:2
Alignment explanation
Indices: 47047--47082 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
47037 TGTGGCATGC
47047 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47083 TCTGATGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49423 original size:215 final size:220
Alignment explanation
Indices: 49022--49436 Score: 531
Period size: 215 Copynumber: 1.9 Consensus size: 220
49012 TATAATACAG
* ** *
49022 GACACAGGGCACTCACTACGTGAGTAGTTTTTTGCAGTTTGTTTTAAATGGGTAATTTTTTTAAA
1 GACACAGGGCACTCACTACGTGAGTAGGTTGATGCAGTTTGTTTTAAATAGGTAATTTTTTTAAA
* *
49087 ATGATATAAATAAAATTTAAATACTTATATTTATTATTTATCCTCTAATAACTTATGTAAGATAG
66 ATGATATAAAT-AAATTT--ATAC-AATATTTATTATTTATCCGCTAATAACTTATGTAAGATAG
* *
49152 ATAGTTTTTATTTCACTTTGAATTTTTTTAAAATTGAGTTTGTATCCGAGTCAACTCGTGACACA
127 ATAGTTTTTATTTCACTTTGAATTTTTTAAAAACTGAGTTTGTATCCGAGTCAACTCGTGACACA
49217 AACTCAGAACTTAACTTTATAATTAACAA
192 AACTCAGAACTTAACTTTATAATTAACAA
* * *
49246 GACACAGGGCACTCACTACGTGAGT-GGTTGATGACAGTTTTTTTTCAATAGGTAGTTTTTTTAA
1 GACACAGGGCACTCACTACGTGAGTAGGTTGATG-CAGTTTGTTTTAAATAGGTAATTTTTTTAA
* * ** *
49310 AATGATATAAAT-AATTT-TA-AATA-TTA-TATTTATCCGGGTAGT-TTTTATTTAAGAT-GAG
65 AATGATATAAATAAATTTATACAATATTTATTATTTATCC-GCTAATAACTTATGTAAGATAGA-
* * * *
49368 TAGTTTTTATTTTATTTTGAATTTTTTAAAAACTGAGTTTGTTTCCGATTCAACTCGTGACACAA
128 TAGTTTTTATTTCACTTTGAATTTTTTAAAAACTGAGTTTGTATCCGAGTCAACTCGTGACACAA
49433 ACTC
193 ACTC
49437 TGACTTTATA
Statistics
Matches: 168, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
214 2 0.01
215 82 0.49
216 6 0.04
217 3 0.02
219 2 0.01
222 5 0.03
223 5 0.03
224 63 0.38
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (220 bp):
GACACAGGGCACTCACTACGTGAGTAGGTTGATGCAGTTTGTTTTAAATAGGTAATTTTTTTAAA
ATGATATAAATAAATTTATACAATATTTATTATTTATCCGCTAATAACTTATGTAAGATAGATAG
TTTTTATTTCACTTTGAATTTTTTAAAAACTGAGTTTGTATCCGAGTCAACTCGTGACACAAACT
CAGAACTTAACTTTATAATTAACAA
Found at i:50148 original size:100 final size:101
Alignment explanation
Indices: 49972--50173 Score: 291
Period size: 100 Copynumber: 2.0 Consensus size: 101
49962 CTGCCAGGCA
* **
49972 TGCAACTGATCACCTTACTGTTCCATTTAGTTTTTATGGTACTAATCCTCTCATATCTGGTAACC
1 TGCAACTAATCACCTTACTGTTCCATTTAGTTTTTATGGTACTAATCCTCTCATATCCAGTAACC
* * * *
50037 ATATTGTAT-CCCGATTAGTCCGGAATCGTGCTTCG
66 ACATTGGATCCCCGACTAGTCCAGAATCGTGCTTCG
* * *
50072 TGCAACTAATCAGCTTACTGTTCCATTTAGTTTTTTTGGTACTAATCCTC-CAGTATCCAGTAAG
1 TGCAACTAATCACCTTACTGTTCCATTTAGTTTTTATGGTACTAATCCTCTCA-TATCCAGTAAC
50136 CACATTGGATCCCCGACTAGTCCAGAATCGTGCTTCG
65 CACATTGGATCCCCGACTAGTCCAGAATCGTGCTTCG
50173 T
1 T
50174 CGGACTCCAT
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
99 2 0.02
100 63 0.70
101 25 0.28
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (101 bp):
TGCAACTAATCACCTTACTGTTCCATTTAGTTTTTATGGTACTAATCCTCTCATATCCAGTAACC
ACATTGGATCCCCGACTAGTCCAGAATCGTGCTTCG
Found at i:50307 original size:116 final size:116
Alignment explanation
Indices: 50088--50778 Score: 833
Period size: 116 Copynumber: 5.8 Consensus size: 116
50078 TAATCAGCTT
* * *
50088 ACTGTTCCATTTAGTTTTTTTGGTACTAATCCTCCAGTATCC-AGTAAGCACATTGGATCCCCGA
1 ACTGTTCCATTTAGTTTTTTTGGTACTAACCCTCCGGTATCCGA-TAACCACATTGGAT-CCCGA
50152 CTAGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCAC
64 CTAGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCAC
50205 ACTGTTCCATTTAGTTTTTTTGGTACTAACCCTCCGGTATCCGATAACCACATTGGATCCCGACT
1 ACTGTTCCATTTAGTTTTTTTGGTACTAACCCTCCGGTATCCGATAACCACATTGGATCCCGACT
*
50270 AGTCCAGAATCGTGCTTCGTCGAACTCCATATGGGGAAGCTCTCCCCGCAC
66 AGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCAC
* * * * **
50321 ATTGTTCCATTTAGTTTTTTTGATACTAACCCTCTGGTATCCGGTAACCACATTGGATCCCTCCC
1 ACTGTTCCATTTAGTTTTTTTGGTACTAACCCTCCGGTATCCGATAACCACATTGGATCCC-GAC
** * * * * **
50386 ATA-TCTGGTAACCAT-ATT-GT---ACCCCGATTAGTCTGGAATCGTGCTTCGTGCAACTAATC
65 -TAGTCCAG-AATCGTGCTTCGTCGGACTCC-A-TA-TGGGGAA----GC-TC-T-C--C----C
* **
50445 AGCTT
112 CGCAC
* * *
50450 ACTGTTCCATTTAGTTTTTTTGGCACTAATCCTCCGGTATCC-AGTAAGCACATTGGATCCCCGA
1 ACTGTTCCATTTAGTTTTTTTGGTACTAACCCTCCGGTATCCGA-TAACCACATTGGAT-CCCGA
50514 CTAGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCAC
64 CTAGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCAC
* * *
50567 ACTGTTCCATTTAGTTTTTTGGGTACTAACCCTCCGGTATCCGGTAACCACATTGGATCTCGACT
1 ACTGTTCCATTTAGTTTTTTTGGTACTAACCCTCCGGTATCCGATAACCACATTGGATCCCGACT
50632 AGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCAC
66 AGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCAC
* * *
50683 ATTGTTCCATTTAG-TTTTTTGATACTAACCCTCCGGTATCCGGTAACCACATTGGATCCCGACT
1 ACTGTTCCATTTAGTTTTTTTGGTACTAACCCTCCGGTATCCGATAACCACATTGGATCCCGACT
*
50747 AGTCCAGAATCGTGCTTCGTCAGACTCCATAT
66 AGTCCAGAATCGTGCTTCGTCGGACTCCATAT
50779 CCCCGCACGT
Statistics
Matches: 493, Mismatches: 52, Indels: 60
0.81 0.09 0.10
Matches are distributed among these distances:
113 4 0.01
114 1 0.00
115 80 0.16
116 191 0.39
117 114 0.23
118 7 0.01
120 2 0.00
121 3 0.01
122 1 0.00
123 2 0.00
124 1 0.00
125 3 0.01
126 2 0.00
128 6 0.01
129 59 0.12
130 10 0.02
131 2 0.00
132 1 0.00
133 4 0.01
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (116 bp):
ACTGTTCCATTTAGTTTTTTTGGTACTAACCCTCCGGTATCCGATAACCACATTGGATCCCGACT
AGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCAC
Found at i:50688 original size:362 final size:361
Alignment explanation
Indices: 50018--50742 Score: 1351
Period size: 362 Copynumber: 2.0 Consensus size: 361
50008 TGGTACTAAT
* *
50018 CCTCTCATATCTGGTAACCATATTGTATCCCGATTAGTCCGGAATCGTGCTTCGTGCAACTAATC
1 CCTCCCATATCTGGTAACCATATTGTACCCCGATTAGTCCGGAATCGTGCTTCGTGCAACTAATC
*
50083 AGCTTACTGTTCCATTTAGTTTTTTTGGTACTAATCCTCCAGTATCCAGTAAGCACATTGGATCC
66 AGCTTACTGTTCCATTTAGTTTTTTTGGCACTAATCCTCCAGTATCCAGTAAGCACATTGGATCC
50148 CCGACTAGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCACACTGTTCC
131 CCGACTAGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCACACTGTTCC
*
50213 ATTTAGTTTTTTTGGTACTAACCCTCCGGTATCCGATAACCACATTGGATCCCGACTAGTCCAGA
196 ATTTAGTTTTTTGGGTACTAACCCTCCGGTATCCGATAACCACATTGGATCCCGACTAGTCCAGA
50278 ATCGTGCTTCGTCGAACTCCATATGGGGAAGCTCTCCCCGCACATTGTTCCATTTAGTTTTTTTG
261 ATCGTGCTTCGTCGAACTCCATATGGGGAAGCTCTCCCCGCACATTGTTCCATTTAG-TTTTTTG
*
50343 ATACTAACCCTCTGGTATCCGGTAACCACATTGGATC
325 ATACTAACCCTCCGGTATCCGGTAACCACATTGGATC
*
50380 CCTCCCATATCTGGTAACCATATTGTACCCCGATTAGTCTGGAATCGTGCTTCGTGCAACTAATC
1 CCTCCCATATCTGGTAACCATATTGTACCCCGATTAGTCCGGAATCGTGCTTCGTGCAACTAATC
*
50445 AGCTTACTGTTCCATTTAGTTTTTTTGGCACTAATCCTCCGGTATCCAGTAAGCACATTGGATCC
66 AGCTTACTGTTCCATTTAGTTTTTTTGGCACTAATCCTCCAGTATCCAGTAAGCACATTGGATCC
50510 CCGACTAGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCACACTGTTCC
131 CCGACTAGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCACACTGTTCC
* *
50575 ATTTAGTTTTTTGGGTACTAACCCTCCGGTATCCGGTAACCACATTGGATCTCGACTAGTCCAGA
196 ATTTAGTTTTTTGGGTACTAACCCTCCGGTATCCGATAACCACATTGGATCCCGACTAGTCCAGA
*
50640 ATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCACATTGTTCCATTTAGTTTTTTGA
261 ATCGTGCTTCGTCGAACTCCATATGGGGAAGCTCTCCCCGCACATTGTTCCATTTAGTTTTTTGA
50705 TACTAACCCTCCGGTATCCGGTAACCACATTGGATC
326 TACTAACCCTCCGGTATCCGGTAACCACATTGGATC
50741 CC
1 CC
50743 GACTAGTCCA
Statistics
Matches: 353, Mismatches: 10, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
361 45 0.13
362 308 0.87
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.31
Consensus pattern (361 bp):
CCTCCCATATCTGGTAACCATATTGTACCCCGATTAGTCCGGAATCGTGCTTCGTGCAACTAATC
AGCTTACTGTTCCATTTAGTTTTTTTGGCACTAATCCTCCAGTATCCAGTAAGCACATTGGATCC
CCGACTAGTCCAGAATCGTGCTTCGTCGGACTCCATATGGGGAAGCTCTCCCCGCACACTGTTCC
ATTTAGTTTTTTGGGTACTAACCCTCCGGTATCCGATAACCACATTGGATCCCGACTAGTCCAGA
ATCGTGCTTCGTCGAACTCCATATGGGGAAGCTCTCCCCGCACATTGTTCCATTTAGTTTTTTGA
TACTAACCCTCCGGTATCCGGTAACCACATTGGATC
Done.