Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017694.1 Corchorus olitorius cultivar O-4 contig17727, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20254
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30
Found at i:809 original size:15 final size:15
Alignment explanation
Indices: 789--817 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
779 TGGGAGTTCA
789 AAATCAACAAGCTCG
1 AAATCAACAAGCTCG
804 AAATCAACAAGCTC
1 AAATCAACAAGCTC
818 CACTTAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.28, G:0.10, T:0.14
Consensus pattern (15 bp):
AAATCAACAAGCTCG
Found at i:1508 original size:33 final size:31
Alignment explanation
Indices: 1402--1547 Score: 123
Period size: 33 Copynumber: 4.5 Consensus size: 31
1392 GAGTAATTCT
* *
1402 AAATCTGTTTTAGATGTTGTTTGCGAT-AATAC
1 AAATCTGTTTT-GGTGTTGTTTGTGATGAA-AC
* ** *
1434 TAAACCTAATTTGAGTGTTGTTTGTGATGACAC
1 -AAATCTGTTTTG-GTGTTGTTTGTGATGAAAC
1467 TAAATCTGTTTTAGGTGTTGTTTGTGATGAAAC
1 -AAATCTGTTTT-GGTGTTGTTTGTGATGAAAC
* **
1500 AAATTCTGTTTTGGATGCTAATTGTGATGAAAAC
1 AAA-TCTGTTTTGG-TGTTGTTTGTGATG-AAAC
1534 AAATCTGTTTTGGT
1 AAATCTGTTTTGGT
1548 TGATCATAGC
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
32 7 0.07
33 78 0.83
34 9 0.10
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.42
Consensus pattern (31 bp):
AAATCTGTTTTGGTGTTGTTTGTGATGAAAC
Found at i:3348 original size:21 final size:21
Alignment explanation
Indices: 3322--3363 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
3312 TAAGGAAGAA
3322 GTTTCAAGCTCATCAGAGTTG
1 GTTTCAAGCTCATCAGAGTTG
*
3343 GTTTCAAGCTCATCGGAGTTG
1 GTTTCAAGCTCATCAGAGTTG
3364 CCTAAGATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.33
Consensus pattern (21 bp):
GTTTCAAGCTCATCAGAGTTG
Found at i:6980 original size:50 final size:50
Alignment explanation
Indices: 6902--7023 Score: 165
Period size: 50 Copynumber: 2.4 Consensus size: 50
6892 CCAGGACTTG
* * *
6902 ACAACTCCTGCCCAGGA-TCTGTTTTGTTGAAAGACGGAAGAAAAATCAGA
1 ACAACTCCTGCCCAGGACT-TGGTCTGTTGAAAAACGGAAGAAAAATCAGA
* *
6952 ACAACTCCTGCCCAGAACTTGGTCTGTTGAAAAACGGAAGAAAATTCAGA
1 ACAACTCCTGCCCAGGACTTGGTCTGTTGAAAAACGGAAGAAAAATCAGA
* *
7002 ACAAGTCCTGTCCAGGACTTGG
1 ACAACTCCTGCCCAGGACTTGG
7024 ACAACTCCTG
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 62 0.98
51 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.21
Consensus pattern (50 bp):
ACAACTCCTGCCCAGGACTTGGTCTGTTGAAAAACGGAAGAAAAATCAGA
Found at i:12487 original size:16 final size:17
Alignment explanation
Indices: 12466--12499 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
12456 TTTATTATCG
12466 AATTTCA-TTTTACCAA
1 AATTTCATTTTTACCAA
12482 AATTTCATTTTTACCAA
1 AATTTCATTTTTACCAA
12499 A
1 A
12500 TTTTATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTTCATTTTTACCAA
Found at i:12544 original size:26 final size:27
Alignment explanation
Indices: 12515--12587 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 27
12505 TTAATAAATT
12515 TTACTATTTAATTACCAAATTTTC-TC
1 TTACTATTTAATTACCAAATTTTCATC
* * * *
12541 TTACTCTTTAATTGTCC-AA-CTTCATT
1 TTACTATTTAATT-ACCAAATTTTCATC
*
12567 TTACTTTTTAATTACCAAATT
1 TTACTATTTAATTACCAAATT
12588 AACCAACCTC
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
25 5 0.14
26 29 0.81
27 2 0.06
ACGTcount: A:0.29, C:0.19, G:0.01, T:0.51
Consensus pattern (27 bp):
TTACTATTTAATTACCAAATTTTCATC
Found at i:12762 original size:25 final size:25
Alignment explanation
Indices: 12699--12890 Score: 198
Period size: 25 Copynumber: 7.6 Consensus size: 25
12689 CTTTAACTAC
*
12699 CCAATTTCATTTTACTTTTTAATTA
1 CCAATTTCATTTTACTTCTTAATTA
12724 CCTAATTTCATTTTACTTCTTAATTA
1 CC-AATTTCATTTTACTTCTTAATTA
* *
12750 CCAATTTCCTTTTACTTTTTAATTA
1 CCAATTTCATTTTACTTCTTAATTA
*
12775 CCAATTTCCTTTTAC-TCTTTAATTA
1 CCAATTTCATTTTACTTC-TTAATTA
* *
12800 CCAATTTTCCTTTAAC-TCTT--TTA
1 CCAA-TTTCATTTTACTTCTTAATTA
* *
12823 CCAAATTCATTTTACTCCTTTTAATTA
1 CCAATTTCATTTTACT--TCTTAATTA
12850 CCAATTTTC-TTTTAC-TCTTTAATTA
1 CCAA-TTTCATTTTACTTC-TTAATTA
*
12875 CCAAGTTCATTTTACT
1 CCAATTTCATTTTACT
12891 CCAAATTTTT
Statistics
Matches: 143, Mismatches: 12, Indels: 23
0.80 0.07 0.13
Matches are distributed among these distances:
22 8 0.06
23 7 0.05
24 5 0.03
25 71 0.50
26 36 0.25
27 13 0.09
28 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.01, T:0.53
Consensus pattern (25 bp):
CCAATTTCATTTTACTTCTTAATTA
Found at i:12862 original size:75 final size:74
Alignment explanation
Indices: 12679--12886 Score: 242
Period size: 75 Copynumber: 2.8 Consensus size: 74
12669 TATTCGAATC
* * * * *
12679 TCATTGTACTCTTTAACTACCCAA-TTTCATTTTACTTTTTAATTACCTAATTTCATTTTACTTC
1 TCATTTTACTTTTTAATTA-CCAATTTTC-TTTTACTCTTTAATTACC-AATTTCATTTAACTTC
*
12743 TTAATTACCAATT
63 TT-ATTACCAAAT
* * *
12756 TCCTTTTACTTTTTAATTACCAATTTCCTTTTACTCTTTAATTACCAATTTTCCTTTAAC-TCTT
1 TCATTTTACTTTTTAATTACCAATTTTCTTTTACTCTTTAATTACCAA-TTTCATTTAACTTCTT
12820 -TTACCAAAT
65 ATTACCAAAT
*
12829 TCATTTTACTCCTTTTAATTACCAATTTTCTTTTACTCTTTAATTACCAAGTTCATTT
1 TCATTTTACT--TTTTAATTACCAATTTTCTTTTACTCTTTAATTACCAATTTCATTT
12887 TACTCCAAAT
Statistics
Matches: 114, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
73 17 0.15
74 6 0.05
75 43 0.38
76 30 0.26
77 18 0.16
ACGTcount: A:0.25, C:0.22, G:0.01, T:0.52
Consensus pattern (74 bp):
TCATTTTACTTTTTAATTACCAATTTTCTTTTACTCTTTAATTACCAATTTCATTTAACTTCTTA
TTACCAAAT
Found at i:12891 original size:25 final size:25
Alignment explanation
Indices: 12679--13188 Score: 260
Period size: 26 Copynumber: 19.6 Consensus size: 25
12669 TATTCGAATC
* *
12679 TCATTGTACTCTTTAACTACCCAATT
1 TCATTTTACTCTTTAATTA-CCAATT
*
12705 TCATTTTACTTTTTAATTACCTAATT
1 TCATTTTACTCTTTAATTACC-AATT
12731 TCATTTTACT-TCTTAATTACCAATT
1 TCATTTTACTCT-TTAATTACCAATT
* *
12756 TCCTTTTACTTTTTAATTACCAATT
1 TCATTTTACTCTTTAATTACCAATT
*
12781 TCCTTTTACTCTTTAATTACCAATTT
1 TCATTTTACTCTTTAATTACCAA-TT
* * *
12807 TCCTTTAACTC-TT--TTACCAAAT
1 TCATTTTACTCTTTAATTACCAATT
12829 TCATTTTACTCCTTTTAATTACCAATTT
1 TCATTTTACT-C-TTTAATTACCAA-TT
*
12857 TC-TTTTACTCTTTAATTACCAAGT
1 TCATTTTACTCTTTAATTACCAATT
**
12881 TCATTTTACTC-CAAATT-----TT
1 TCATTTTACTCTTTAATTACCAATT
*
12900 TC-TTTTCACTCTTTTAATTACCAAAT
1 TCATTTT-ACTC-TTTAATTACCAATT
* *
12926 TCATTTTTTACCCTTTACTTAACCAAATTT
1 TCA--TTTTACTCTTTAATT-ACC-AA-TT
* *
12956 TCTTTTTACTCTTTTATTACCAAATT
1 TCATTTTACTCTTTAATTACC-AATT
* * *
12982 CTC-TCTTACTCTTTAATCATCAAATT
1 -TCATTTTACTCTTTAATTA-CCAATT
* * * *
13008 GACTCGTTACTCTTTTATTCTTTAATTACTAAAT
1 ---TC---A-TT--TTACTCTTTAATTACCAATT
* *
13042 TCATTTTACTTTTTTAATTACTAATT
1 TCATTTTAC-TCTTTAATTACCAATT
*
13068 TCCTTTTAC-CTTTTAATTACCGAA-T
1 TCATTTTACTC-TTTAATTACC-AATT
* *
13093 TCATTTTTTAC-CTTTTAGTTACCAAAT
1 TCA--TTTTACTC-TTTAATTACCAATT
13120 TCATTTTTACTCTTTTAATTACCAAATT
1 TCA-TTTTACTC-TTTAATTACC-AATT
* * * * * *
13148 TCCTCTTACTTTTTGACTATCAAATT
1 TCATTTTACTCTTTAATTA-CCAATT
*
13174 TCTTTTTACTCTTTA
1 TCATTTTACTCTTTA
13189 GGCCTTTTCC
Statistics
Matches: 386, Mismatches: 53, Indels: 90
0.73 0.10 0.17
Matches are distributed among these distances:
18 4 0.01
19 7 0.02
21 4 0.01
22 9 0.02
23 8 0.02
24 7 0.02
25 90 0.23
26 129 0.33
27 69 0.18
28 30 0.08
29 6 0.02
30 3 0.01
31 2 0.01
33 2 0.01
34 4 0.01
35 12 0.03
ACGTcount: A:0.25, C:0.21, G:0.01, T:0.52
Consensus pattern (25 bp):
TCATTTTACTCTTTAATTACCAATT
Found at i:12932 original size:27 final size:26
Alignment explanation
Indices: 12902--13187 Score: 145
Period size: 27 Copynumber: 10.4 Consensus size: 26
12892 CAAATTTTTC
12902 TTTTCACTCTTTTAATTACCAAATTCA
1 TTTT-ACTCTTTTAATTACCAAATTCA
* * *
12929 TTTTTTAC-CCTTTACTTAACCAAATTTTCT
1 --TTTTACTCTTTTAATT-ACCAAA--TTCA
12959 TTTTACTCTTTT-ATTACCAAATTC-
1 TTTTACTCTTTTAATTACCAAATTCA
* * *
12983 TCTCTTACTC-TTTAATCATCAAATTGA
1 T-T-TTACTCTTTTAATTACCAAATTCA
* *
13010 CTCGTTACTCTTTTATTCTTTAATTACTAAATTCA
1 -T-TTTACTC------T-TTTAATTACCAAATTCA
* * * *
13045 TTTTACTTTTTTAATTACTAATTTCC
1 TTTTACTCTTTTAATTACCAAATTCA
*
13071 TTTTAC-CTTTTAATTACCGAATTCA
1 TTTTACTCTTTTAATTACCAAATTCA
*
13096 TTTTTTAC-CTTTTAGTTACCAAATTCA
1 --TTTTACTCTTTTAATTACCAAATTCA
*
13123 TTTTTACTCTTTTAATTACCAAATTTCC
1 -TTTTACTCTTTTAATTACCAAA-TTCA
* * * * *
13151 TCTTACT-TTTTGACTATCAAATTTCT
1 TTTTACTCTTTTAATTACCAAA-TTCA
13177 TTTTACTCTTT
1 TTTTACTCTTT
13188 AGGCCTTTTC
Statistics
Matches: 203, Mismatches: 32, Indels: 46
0.72 0.11 0.16
Matches are distributed among these distances:
24 1 0.00
25 21 0.10
26 64 0.32
27 66 0.33
28 21 0.10
29 8 0.04
30 3 0.01
33 5 0.02
34 1 0.00
35 13 0.06
ACGTcount: A:0.25, C:0.20, G:0.02, T:0.53
Consensus pattern (26 bp):
TTTTACTCTTTTAATTACCAAATTCA
Found at i:14781 original size:154 final size:154
Alignment explanation
Indices: 14501--17468 Score: 4451
Period size: 154 Copynumber: 19.3 Consensus size: 154
14491 TCCCGTGTCA
* * * *
14501 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACGAAAATGATAAGAGTTGGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
**
14566 ACAATGGAAAGAAAAGCATTGAGGTTT-CTCAAATAAAAGACGATTCAAAAC-GACACTAATGGG
66 ACAATGGAAAGAAAAGCATTGAGGTTTGC-CAAATCGAAGACGATTCAAAACGGA-ACTAATGGG
*
14629 CCCCGATAGGCCCAAAATAACAAGTT
129 CCCCGATAGGCCCAAAATAACAAGTG
***
14655 TTCCAAATGAGCTAAAAACTTCACAAAAGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * *
14720 ACAATGGAAACAAAAGCATCGAGGGTTGCCAAATCG-AGTACGATTCAAAACGGAACTAAT-GGC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAG-ACGATTCAAAACGGAACTAATGGGC
* *
14783 CCCGAAAGGCCTAAAATAACAAGTG
130 CCCGATAGGCCCAAAATAACAAGTG
14808 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * *
14873 ACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAATACGGTTCAAAAC-GACACTAATGGGC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGA-ACTAATGGGC
14937 CCCGATAGGCCCAAAATAACAAGTG
130 CCCGATAGGCCCAAAATAACAAGTG
14962 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* *
15027 ACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAAC-GACACTAATGGGC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGA-ACTAATGGGC
*
15091 CCCGATAGGCCCAAAATAACAATTG
130 CCCGATAGGCCCAAAATAACAAGTG
* * * *
15116 TTCCAAATGAGCTAATAACTTCACAGTGGATTAATCTCACGAAAATGATAATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
*
15181 ACAATGGAAAGAAAAGCATTGAGGTTT-CTCAAATCCAAGACGATTCAAAAC-GACAC-AATCGG
66 ACAATGGAAAGAAAAGCATTGAGGTTTGC-CAAATCGAAGACGATTCAAAACGGA-ACTAAT-GG
15243 GCCCCGATAGGCCCAAAATAACAAGTG
128 GCCCCGATAGGCCCAAAATAACAAGTG
* * * *
15270 TTCCAAATGAGCTAAAAGCTTCACA-TTGCCTAATCTCACCAAAATGATTATAGTTAGTCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
*
15334 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAATGGAACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
*
15399 TCGATAGGCCCAAAATAACAAGTG
131 CCGATAGGCCCAAAATAACAAGTG
* * * *
15423 TTCCAAATGAGCTAAGAACTTCACAGTGGACTAATCTCATCAAAATGATTACAGTTAGTCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* *
15488 ACAATGGAAAGAAAAGCATTGAGATTTGCCAAATCGTAGACGATTCAAAACGGAACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
15553 CCGATAGGCCCAAAATAACAAGTG
131 CCGATAGGCCCAAAATAACAAGTG
* *
15577 TTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGTCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
*
15642 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATAGAAGACGATTCAAAACGGAACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
* * *
15707 CCGATAGGGCCAGAATAACAAGTC
131 CCGATAGGCCCAAAATAACAAGTG
* * * *
15731 TTCCAATTGAGCTAAGAACTTCACAGTGGACAAATCTCATCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * * * *
15796 ACAACT-TAAAGAATATCTTTGAGGTTTGCCAAATTGAAGACGATTCAAAACGGAACTAATGGGC
66 ACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGC
* *
15860 CCTGATGGGCCCAAAATAACAAGTG
130 CCCGATAGGCCCAAAATAACAAGTG
* * *
15885 TTCCAAATGAGCTACAAACTTCACAGTGGACTAATCTCTCCAAAATGATTATATTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * * * *
15950 ACAACT-TAAAGAATATCTTTGAGGTTTGCCAAATTGAAGACGATTCAAAACGGAACTAATGGGC
66 ACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGC
16014 CCCGAT-GTGCCCAAAATAACAAGTG
130 CCCGATAG-GCCCAAAATAACAAGTG
* * *
16039 TTCCAAATGAGCTAAAAACTTCACATTGG-CTAATCTCACCAAAATGAATATTGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * **
16103 ACAATGGAAAG-AAAGCCTTGAGGTTTGCCAAATCGAAGACGATTCAAAATGTCACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
* *
16167 CCGTTAGGCCCAAACTAACAAGTG
131 CCGATAGGCCCAAAATAACAAGTG
* * *
16191 ATCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAATTGATTATAGTTACGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * * **
16256 ATAATGGAAAGAAAAGCACTGAGGTTTGCCAAATCGAAGACGATTCAAAATGTCACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
* *
16321 GCGAAAGGCCCAAAATAACAAGTG
131 CCGATAGGCCCAAAATAACAAGTG
* *
16345 TTCCAAATGAGTTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTACGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * **
16410 ATAATGGAAAGAAAAGCACTGAGGTTTGCCAAATCGAAGACGATTCAAAATC-TCACTAATGGGC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA-CGGAACTAATGGGC
*
16474 CGCGATAGGCCCAAAATAACAAGTG
130 CCCGATAGGCCCAAAATAACAAGTG
* * **
16499 TTCCAAATGAGTTAAAAACTTCACAGTGGACTAATCTCACAAAAATGATTATAGTTAATCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
*
16564 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCAAAGACGATTCAAAACGGAACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
16629 CCGATAGGCCCAAAATAACAAGTG
131 CCGATAGGCCCAAAATAACAAGTG
* * * * *
16653 TTCCAAATGAGCTAAGAATTTCATAGTGGACTAATCTCATCAAAATGATTATAGATAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * *
16718 ACAATGCAAAGAAATGCATTGATGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
16783 CCGATAGGCCCAAAATAACAAGTG
131 CCGATAGGCCCAAAATAACAAGTG
* * *
16807 TTCCAAATGAGCTAAAAACTTCATAGTGGATTAATCTCATCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
** * * *
16872 ACAACT-TCAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGACGATTCAAAACAGAACTAATAGGC
66 ACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGC
*
16936 CCCAATAGGCCCAAAATAACAAGTG
130 CCCGATAGGCCCAAAATAACAAGTG
* * * * *
16961 TTCCAAATGAGCTAAGAACTTAACAGTGGACTAATCTCACAAAAATGATTATCGTTAGTCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * * * *
17026 AAAATGGAAAGAAAAGCTTTGAGTTTTACCAAATCGAAGACGATTCAAAATGGAACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
17091 CCGATAGGCCCAAAATAACAAGTG
131 CCGATAGGCCCAAAATAACAAGTG
* * ** *
17115 ATT-CAAATGAGCTAAACACTTCACAGTGGACTAATCTCACCAAAATGATTATAGATAGTACACA
1 -TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATA
* *
17179 AAAAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGC
65 AACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGC
17244 CCCGATAGGCCCAAAATAACAAGTG
130 CCCGATAGGCCCAAAATAACAAGTG
* *
17269 TTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGTCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
17334 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
* *
17399 CCCATAGGCCAAAAATAACAAGTG
131 CCGATAGGCCCAAAATAACAAGTG
* * * * *
17423 TTGCAAATGAGCTAAAATCATCACAGTCGACTAATCTCGCCAAAAT
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAAT
17469 AACAAGTGTT
Statistics
Matches: 2587, Mismatches: 203, Indels: 48
0.91 0.07 0.02
Matches are distributed among these distances:
152 96 0.04
153 361 0.14
154 2123 0.82
155 7 0.00
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (154 bp):
TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
CCGATAGGCCCAAAATAACAAGTG
Found at i:15267 original size:308 final size:306
Alignment explanation
Indices: 14501--20254 Score: 6708
Period size: 308 Copynumber: 18.5 Consensus size: 306
14491 TCCCGTGTCA
* * * *
14501 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACGAAAATGATAAGAGTTGGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
**
14566 ACAATGGAAAGAAAAGCATTGAGGTTT-CTCAAATAAAAGACGATTCAAAACGACACTAATGGGC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGC-CAAATCGAAGACGATTCAAAACGA-ACTAATGGGC
* ***
14630 CCCGATAGGCCCAAAATAACAAGTTTTCCAAATGAGCTAAAAACTTCACAAAAGACTAATCTCAC
129 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
* * *
14695 CAAAATGATTATAGTTAGGCCATAAACAATGGAAACAAAAGCATCGAGGGTTGCCAAATCG-AGT
194 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAG-
* *
14759 ACGATTCAAAACGGAACTAAT-GGCCCCGAAAGGCCTAAAATAACAAGTG
258 ACGATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
14808 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * *
14873 ACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAATACGGTTCAAAACGACACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGA-ACTAATGGGCC
14938 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
130 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
*
15003 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGAC
195 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGAC
* *
15068 GATTCAGAACGACACTAATGGGCCCCGATAGGCCCAAAATAACAATTG
260 GATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
* * * *
15116 TTCCAAATGAGCTAATAACTTCACAGTGGATTAATCTCACGAAAATGATAATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
*
15181 ACAATGGAAAGAAAAGCATTGAGGTTT-CTCAAATCCAAGACGATTCAAAACGACAC-AATCGGG
66 ACAATGGAAAGAAAAGCATTGAGGTTTGC-CAAATCGAAGACGATTCAAAACGA-ACTAAT-GGG
* * *
15244 CCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAGCTTCACA-TTGCCTAATCTCA
128 CCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCA
*
15308 CCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAG
193 CCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAG
* *
15373 ACGATTCAAAATGGAACTAATGGGCCTCGATAGGCCCAAAATAACAAGTG
258 ACGATTCAAAA-CGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
* * * *
15423 TTCCAAATGAGCTAAGAACTTCACAGTGGACTAATCTCATCAAAATGATTACAGTTAGTCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* *
15488 ACAATGGAAAGAAAAGCATTGAGATTTGCCAAATCGTAGACGATTCAAAACGGAACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGCC
*
15553 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTCACC
130 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* *
15618 AAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATAGAAGAC
195 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGAC
* * *
15683 GATTCAAAACGGAACTAATGGGCCCCGATAGGGCCAGAATAACAAGTC
260 GATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
* * * *
15731 TTCCAATTGAGCTAAGAACTTCACAGTGGACAAATCTCATCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * * * *
15796 ACAACT-TAAAGAATATCTTTGAGGTTTGCCAAATTGAAGACGATTCAAAACGGAACTAATGGGC
66 ACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGC
* * * *
15860 CCTGATGGGCCCAAAATAACAAGTGTTCCAAATGAGCTACAAACTTCACAGTGGACTAATCTCTC
129 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
* * * * * *
15925 CAAAATGATTATATTTAGGCCATAAACAACT-TAAAGAATATCTTTGAGGTTTGCCAAATTGAAG
194 CAAAATGATTATAGTTAGGCCATAAACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAG
15989 ACGATTCAAAACGGAACTAATGGGCCCCGAT-GTGCCCAAAATAACAAGTG
258 ACGATTCAAAAC-GAACTAATGGGCCCCGATAG-GCCCAAAATAACAAGTG
* * *
16039 TTCCAAATGAGCTAAAAACTTCACATTGG-CTAATCTCACCAAAATGAATATTGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * *
16103 ACAATGGAAAG-AAAGCCTTGAGGTTTGCCAAATCGAAGACGATTCAAAATGTCACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG-AACTAATGGGCC
* * *
16167 CCGTTAGGCCCAAACTAACAAGTGATCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
130 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* * * *
16232 AAATTGATTATAGTTACGCCATAAATAATGGAAAGAAAAGCACTGAGGTTTGCCAAATCGAAGAC
195 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGAC
* * * *
16297 GATTCAAAATGTCACTAATGGGCCGCGAAAGGCCCAAAATAACAAGTG
260 GATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
* *
16345 TTCCAAATGAGTTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTACGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * **
16410 ATAATGGAAAGAAAAGCACTGAGGTTTGCCAAATCGAAGACGATTCAAAATCTCACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA-CGAACTAATGGGCC
* * *
16475 GCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGTTAAAAACTTCACAGTGGACTAATCTCACA
130 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
** *
16540 AAAATGATTATAGTTAATCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCAAAGAC
195 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGAC
16605 GATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
260 GATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
* * * * *
16653 TTCCAAATGAGCTAAGAATTTCATAGTGGACTAATCTCATCAAAATGATTATAGATAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * *
16718 ACAATGCAAAGAAATGCATTGATGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGCC
* * *
16783 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCATAGTGGATTAATCTCATC
130 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
** *
16848 AAAATGATTATAGTTAGGCCATAAACAACT-TCAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGA
195 AAAATGATTATAGTTAGGCCATAAACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGA
* *
16912 CGATTCAAAACAGAACTAATAGGCCCCAATAGGCCCAAAATAACAAGTG
259 CGATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
* * * * *
16961 TTCCAAATGAGCTAAGAACTTAACAGTGGACTAATCTCACAAAAATGATTATCGTTAGTCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * * * *
17026 AAAATGGAAAGAAAAGCTTTGAGTTTTACCAAATCGAAGACGATTCAAAATGGAACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA-CGAACTAATGGGCC
*
17091 CCGATAGGCCCAAAATAACAAGTGATT-CAAATGAGCTAAACACTTCACAGTGGACTAATCTCAC
130 CCGATAGGCCCAAAATAACAAGTG-TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
* ** * * *
17155 CAAAATGATTATAGATAGTACACAAAAAATGGAAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGA
194 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGA
17220 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
259 CGATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
* *
17269 TTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGTCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
17334 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGCC
* * * * * * *
17399 CCCATAGGCCAAAAATAACAAGTGTTGCAAATGAGCTAAAATCATCACAGTCGACTAATCTCGCC
130 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
** * * * * * * * **
17464 AAAAT-AACA-AG-T-GTTCCATATGAGCTAA---AAACTTCACAGGCGACT-A-ATCTAACCAA
195 AAAATGATTATAGTTAG-GCCATA--AAC-AATGGAAA---GAAAAGC-ATTGAGGT-TTGCC-A
** * * * * * **** *
17520 AAT-GATTA-TAGT-AACGACATAAATAATGGAAAGAAAAGCATTGAGGTTTGCC-AAAT--CGA
250 AATCGAAGACGATTCAA-AAC-GAACTAATGG---GCCCCG-A-T-AGG---CCCAAAATAAC-A
*
17579 AGACG
303 AG-TG
* * * *** ** * ** * ** *
17584 ATTCAAAACGGAACTAATGGGCCCCGATAG-GCCCAAAATAACAAGTGTTCC-AAATGAGCTAAA
1 -TTCCAAA-TGAGCTAA-AAACTTC-ACAGTGGAC-TAAT--C---T-CACCAAAATGA--T-TA
* * * * *** ** ** * * *
17647 AACTTCA--CAATCAACTAATCTCACCAAAATG-ATT-ATAATTAGGCCATAA---AA-ATGGAA
52 TAGTT-AGGCCATAAAC-AATGGAAAGAAAA-GCATTGA-GGTT-TGCCA-AATCGAAGA-CGAT
** * * * * ** ** ** **
17704 AGAAAA-GCATTGA-GGTTTGCCAAATCGA-AGACGATTCAAACGGAACTAA-TAGGCCCCGAT-
110 TCAAAACGAACTAATGG---GCC---CCGATAG--G-CCCAAA-ATAAC-AAGT-GTTCCAAATG
* * * *
17764 AGGCCCAAAATAACAAGTGTTC-CAAAT-GAGCTAAAAACTTCA-CAATCAACTAATCTCACCAA
163 A-G--CTAAA-AAC-----TTCAC-AGTGGA-CT--AATC-TCACCAA--AA-TGAT-T-----A
* * * ** * ** * ** ** ***** *
17826 AATGATTATAG--TTAGGCCATAAACAATGGAAAG-A-AAAGCATTGAGGTTTGCCAA-ATCGAA
205 TA-G-TTA-GGCCATAAACAATGGA-AA-GAAAAGCATTGAGGTTTGCCAAAT-CGAAGA-CG--
17886 GACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
261 ----ATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
* * *
17937 ATCCAAATGAGCTAAAAACTTACACAGTGGACTAATCTCACCAAAATGATTACAGTTACGCCATA
1 TTCCAAATGAGCTAAAAACTT-CACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATA
*
18002 AACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATCGGG
65 AACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GAACTAAT-GGG
* * * * *
18067 CCCCGATACGCAACAAAATAAAAAGTGTTCCAGATTAGCTAAAAACTTCACAGTGGACTAATCTC
128 CCCCGATAGGC-CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTC
* * * *
18132 ACCAAAATGATTACAGGTAGGCCATAAACAATGGAAAGAAAAACAATTAGAGGTTTACCAAATCG
192 ACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC-ATT-GAGGTTTGCCAAATCG
* * * ** ** *
18197 AAGACGATTTAAAATAGTCACTAATGGGCCTTGATACACACAAAATAACAAAGTG
255 AAGACGATTCAAAA-CG-AACTAATGGGCCCCGATAGGCCCAAAATAAC-AAGTG
18252 TTCCAAATGAGCTAAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATA
1 TTCCAAATGAGCT-AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATA
* * ** * * *
18317 AAAAATGGAAACAAAAGCATCAAGGGTTGCCAAATC---GACGATTCAAAACGTCACTAATGGGT
65 AACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG-AACTAATGGGC
** *
18379 CTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGTCTAATCTCAC
129 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
* * * * * *
18444 GAAAATGATAAGAGTTAGGCAATAAACAATTGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGA
194 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGA
* *
18509 CGGTTCAAAACGATACTAATGGGCCCCGATAGGCCCATAATAACAAGTG
259 CGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
18558 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * *
18623 ACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATTGAAGACGATTCAGAACGACACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGA-ACTAATGGGCC
* *
18688 CCGATAGGCCCAAAATAACAATTGTTCCAAATGAGCTAAAAACTTCAC-GTGGACTAATCTCACG
130 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
*
18752 AAAATGATAATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT-CTCAAATCGAAGA
195 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGC-CAAATCGAAGA
18816 CGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
259 CGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
*
18865 TTCCAAATGAGCTAAAAACTTCACAATGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* ** * * *
18930 ACAATGGAAACAAAAGCATCAAGGGTTGCCAAATCGAATACGATTCAAGACGGAACTAAT-GGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGCC
* *
18994 CCGAAAGGCCCAAAATAACAAGTGTTCTAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
130 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* * *
19059 AAAATGATTATAGGTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGTTTCCCAAATCGAAGAC
195 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGAC
* * * *
19124 GATTTAGAACGACACTAATGGGCCCCGATATGCCCAAAATAACAATTG
260 GATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
*
19172 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGGTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
*
19237 ACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGCC
*
19302 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAAC
130 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* * * *
19367 AAAATGATTACAGTTAGTCCATAACCAATGGAAAGAAAAGCCTTGAGGTTTTGCCAAATCGAAGA
195 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGG-TTTGCCAAATCGAAGA
* *
19432 CGATTCAAAACGGAACTAATGGGCCCCGATAGGGCCAGAATAACAAGTG
259 CGATTCAAAAC-GAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
* * * *
19481 TTCCAATTGAGCTAAGAACTTCACAGTGGACAAATCTCATCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * * * *
19546 ACAACT-TAAAGAATATCTTTGAGGTTTGCCAAATTGAAGACGATTCAAAACGGAACTAATGGGC
66 ACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGC
*
19610 CCCGATGGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
129 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
* *
19675 CAAAATGATTATAGTTAGGCCATAAACAACGGAAAGAAAAGCCTTGAGGTTTGCCAAATCGAAGA
194 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGA
* * *
19740 CGATTCAAAATGTCACTAATGGGCCCCGATAGGCCCAAACTAACAAGTG
259 CGATTCAAAACG-AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
* * * * * *
19789 ATCCAAATGAGCTAAAAACTTAACAATGGACTAATCTCACCAAATTGATTATAGTTACGCCATAT
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
*
19854 ATAATGGAAAGAAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT-GG-
66 ACAATGGAAAG-AAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GAACTAATGGGC
19917 CCCGATA-G-CC-AAATAACAAGTGTTCCAAATGAGCT-AAAACTTCACAGTGGACTAATCTCAC
129 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
* * * *
19978 GAAAATGATAATAGTTAGGCCATAAACACTGGAAAGAAAGGCATTGAGGTTT-CTCAAATCGAAG
194 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGC-CAAATCGAAG
*
20042 ACGATTCAAAACGACACTAACGGGCCCCGATAGGCCCAAAATAACAAGTG
258 ACGATTCAAAACGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
* * *
20092 TTCCAAATGAGCTAAAAGCTTCACAATGGACTAGTCTCACCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * * *
20157 ACAATGGAAAGAAAAACATTGAGGTTTACCAAATCGAAGACGATTTAAAACGTCACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG-AACTAATGGGCC
** * *
20222 TTGACT-GGCACAAAATAACAAGTGTTCTAAATG
130 CCGA-TAGGCCCAAAATAACAAGTGTTCCAAATG
Statistics
Matches: 4671, Mismatches: 581, Indels: 390
0.83 0.10 0.07
Matches are distributed among these distances:
301 1 0.00
302 44 0.01
303 197 0.04
304 29 0.01
305 95 0.02
306 300 0.06
307 1156 0.25
308 1897 0.41
309 338 0.07
310 90 0.02
311 12 0.00
312 20 0.00
313 12 0.00
314 28 0.01
315 95 0.02
316 21 0.00
317 9 0.00
318 12 0.00
319 13 0.00
320 6 0.00
321 1 0.00
323 2 0.00
324 12 0.00
325 6 0.00
326 21 0.00
327 20 0.00
328 14 0.00
329 4 0.00
330 8 0.00
331 6 0.00
332 5 0.00
333 7 0.00
335 7 0.00
336 6 0.00
338 9 0.00
339 4 0.00
340 10 0.00
341 15 0.00
342 17 0.00
343 22 0.00
344 8 0.00
345 13 0.00
346 1 0.00
347 3 0.00
348 1 0.00
350 7 0.00
351 9 0.00
352 8 0.00
353 11 0.00
354 7 0.00
355 8 0.00
356 4 0.00
357 4 0.00
358 2 0.00
361 12 0.00
362 2 0.00
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (306 bp):
TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGAACTAATGGGCCC
CGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCA
AAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACG
ATTCAAAACGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG
Found at i:15368 original size:461 final size:460
Alignment explanation
Indices: 14501--20254 Score: 7085
Period size: 462 Copynumber: 12.4 Consensus size: 460
14491 TCCCGTGTCA
* * * *
14501 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACGAAAATGATAAGAGTTGGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
**
14566 ACAATGGAAAGAAAAGCATTGAGGTTT-CTCAAATAAAAGACGATTCAAAACGACACTAATGGGC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGC-CAAATCGAAGACGATTCAAAACGACACTAATGGGC
* ***
14630 CCCGATAGGCCCAAAATAACAAGTTTTCCAAATGAGCTAAAAACTTCACAAAAGACTAATCTCAC
130 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
* * *
14695 CAAAATGATTATAGTTAGGCCATAAACAATGGAAACAAAAGCATCGAGGGTTGCCAAATCG-AGT
195 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGA-GGTTTCCAAATCGAAG-
* *
14759 ACGATTCAAAACGGAACTAAT-GGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAA
258 ACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCT-A
14823 AAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
322 AAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
* * *
14888 GCATTGAGGTTTCCCAAATCGAATACGGTTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAA
387 GCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAA
14953 TAACAAGTG
452 TAACAAGTG
14962 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* *
15027 ACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAGAACGACACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTAATGGGCC
* * * *
15092 CCGATAGGCCCAAAATAACAATTGTTCCAAATGAGCTAATAACTTCACAGTGGATTAATCTCACG
131 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* *
15157 AAAATGATAATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCTCAAATCCAAGAC
196 AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTC-CAAATCGAAGAC
15222 GATTCAAAAC-GACAC-AATCGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
260 GATTCAAAACGGA-ACTAAT-GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
* * *
15285 AAGCTTCACA-TTGCCTAATCTCACCAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAA
323 AA-CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
* *
15349 GCATTGAGGTTTGCCAAATCGAAGACGATTCAAAATGGA-ACTAATGGGCCTCGATAGGCCCAAA
387 GCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA-CGACACTAATGGGCCCCGATAGGCCCAAA
15413 ATAACAAGTG
451 ATAACAAGTG
* * * *
15423 TTCCAAATGAGCTAAGAACTTCACAGTGGACTAATCTCATCAAAATGATTACAGTTAGTCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* *
15488 ACAATGGAAAGAAAAGCATTGAGATTTGCCAAATCGTAGACGATTCAAAACGGA-ACTAATGGGC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GACACTAATGGGC
*
15552 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTCAC
130 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
* *
15617 CAAAATGATTATAGTTAGTCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATAGAAGA
195 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT-CCAAATCGAAGA
* * * *
15682 CGATTCAAAACGGAACTAATGGGCCCCGATAGGGCCAGAATAACAAGTCTTCCAATTGAGCTAAG
259 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA-
* * * *
15747 AACTTCACAGTGGACAAATCTCATCAAAATGATTATAGTTAGGCCATAAACAACT-TAAAGAATA
323 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAA-TGGAAAGAAAA
* * * * *
15811 TCTTTGAGGTTTGCCAAATTGAAGACGATTCAAAACGGA-ACTAATGGGCCCTGATGGGCCCAAA
387 GCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GACACTAATGGGCCCCGATAGGCCCAAA
15875 ATAACAAGTG
451 ATAACAAGTG
* * *
15885 TTCCAAATGAGCTACAAACTTCACAGTGGACTAATCTCTCCAAAATGATTATATTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * * * *
15950 ACAACT-TAAAGAATATCTTTGAGGTTTGCCAAATTGAAGACGATTCAAAACGGA-ACTAATGGG
66 ACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GACACTAATGGG
*
16013 CCCCGAT-GTGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACATTGG-CTAATCTC
129 CCCCGATAG-GCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTC
* * *
16076 ACCAAAATGAATATTGTTAGGCCATAAACAATGGAAAG-AAAGCCTTGAGGTTTGCCAAATCGAA
193 ACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT-CCAAATCGAA
* ** * * *
16140 GACGATTCAAAATGTCACTAATGGGCCCCGTTAGGCCCAAACTAACAAGTGATCCAAATGAGCTA
257 GACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCT-
* * *
16205 AAAACTTCACAGTGGACTAATCTCACCAAATTGATTATAGTTACGCCATAAATAATGGAAAGAAA
321 AAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
* * * * *
16270 AGCACTGAGGTTTGCCAAATCGAAGACGATTCAAAATGTCACTAATGGGCCGCGAAAGGCCCAAA
386 AGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAA
16335 ATAACAAGTG
451 ATAACAAGTG
* *
16345 TTCCAAATGAGTTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTACGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * *
16410 ATAATGGAAAGAAAAGCACTGAGGTTTGCCAAATCGAAGACGATTCAAAATC-TCACTAATGGGC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA-CGACACTAATGGGC
* *
16474 CGCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGTTAAAAACTTCACAGTGGACTAATCTCAC
130 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
* ** *
16539 AAAAATGATTATAGTTAATCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCAAAGA
195 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT-CCAAATCGAAGA
16604 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAG
259 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA-
* * * * * *
16669 AATTTCATAGTGGACTAATCTCATCAAAATGATTATAGATAGGCCATAAACAATGCAAAGAAATG
323 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
*
16734 CATTGATGTTTGCCAAATCGAAGACGATTCAAAACGGA-ACTAATGGGCCCCGATAGGCCCAAAA
388 CATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GACACTAATGGGCCCCGATAGGCCCAAAA
16798 TAACAAGTG
452 TAACAAGTG
* * *
16807 TTCCAAATGAGCTAAAAACTTCATAGTGGATTAATCTCATCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
** * *
16872 ACAACT-TCAAGAAAAGCTTTGAGGTTTGCCAAATCGAAGACGATTCAAAACAGA-ACTAATAGG
66 ACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GACACTAATGGG
* * *
16935 CCCCAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAGAACTTAACAGTGGACTAATCTCA
129 CCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCA
* * * * * *
17000 CAAAAATGATTATCGTTAGTCCATAAAAAATGGAAAGAAAAGCTTTGAGTTTTACCAAATCGAAG
194 CCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT-CCAAATCGAAG
*
17065 ACGATTCAAAATGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGATT-CAAATGAGCTA
258 ACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTG-TTCCAAATGAGCTA
* ** * *
17129 AACACTTCACAGTGGACTAATCTCACCAAAATGATTATAGATAGTACACAAAAAATGGAAAGAAA
322 AA-ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAA
*
17194 AGCTTTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGA-ACTAATGGGCCCCGATAGGCCCAA
386 AGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GACACTAATGGGCCCCGATAGGCCCAA
17258 AATAACAAGTG
450 AATAACAAGTG
* *
17269 TTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGTCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
17334 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGA-ACTAATGGGC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GACACTAATGGGC
* * * * * * *
17398 CCCCATAGGCCAAAAATAACAAGTGTTGCAAATGAGCTAAAATCATCACAGTCGACTAATCTCGC
130 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
** * * * * * * * ** **
17463 CAAAAT-AACA-AG-T-GTTCCATATGAGCTAA---AAACTTCACAGGCGACTAATCTAACCAAA
195 CAAAATGATTATAGTTAG-GCCATA--AAC-AATGGAAA---GAAAAGC-ATTGAGGTTTCC-AA
* * * ** ** *** **
17521 AT-GATTATAGTAACGACATAAATAATGGAAAGAA-AAGCATTGAGGTTTG-CC-AAAT--CGAA
251 ATCG---A-AG--ACGA-TTCAA-AACGGAACTAATGGGCCCCGA--TAGGCCCAAAATAAC-AA
* * * * ** ** * ** * **
17580 GACGATTCAAAACGGAACTAATGGGCCCCGATAG-GCCCAAAATAACAAGTGTTCC-AAATGAGC
305 G-TG-TTCCAAA-TGAGCTAA--AACTTC-ACAGTGGAC-TAAT--C---T-CACCAAAATGA--
* * * * * *** ** ** * *
17643 TAAAAACTTCA--CAATCAACTAATCTCACCAAAATG-ATT-ATAATTAGGCCATAAAAATGGAA
355 T-TATAGTT-AGGCCATAAAC-AATGGAAAGAAAA-GCATTGA-GGTT-TGCC----AAATCG-A
* * **** * * **** ** ** * **
17704 AGAAAAGCATTGAGGTTTG-C-CAAATCGAAGACGATTCAAACGGAACTAATAGGCCCCGATAG
409 AG--ACG-ATTCA-AAACGACACTAATGGGCCCCGA-T-AGGCCCAA--AATA--ACAAG-T-G
** * **
17766 GCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATCAACTAATCTCACCAAAATGA
1 TTCC---A--------------AATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGA
17831 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
49 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
*
17896 AACGGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGATCCAAATGAGCTAAAAACTTAC
114 AAC-GACACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTT-C
* *
17960 ACAGTGGACTAATCTCACCAAAATGATTACAGTTACGCCATAAACAATGGAAAGAAAAGCATTGA
177 ACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGA
* * * *
18025 GGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATCGGGCCCCGATACGCAACAAAATAAAA
242 -GGTTTCCAAATCGAAGACGATTCAAAACGGAACTAAT-GGGCCCCGATAGGC-CCAAAATAACA
* * * *
18090 AGTGTTCCAGATTAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTACAGGTAGGCC
304 AGTGTTCCAAATGAGCT-AAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCC
* * * * *
18155 ATAAACAATGGAAAGAAAAACAATTAGAGGTTTACCAAATCGAAGACGATTTAAAATAGTCACTA
368 ATAAACAATGGAAAGAAAAGC-ATT-GAGGTTTGCCAAATCGAAGACGATTCAAAA-CGACACTA
** ** *
18220 ATGGGCCTTGATACACACAAAATAACAAAGTG
430 ATGGGCCCCGATAGGCCCAAAATAAC-AAGTG
18252 TTCCAAATGAGCTAAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATA
1 TTCCAAATGAGCT-AAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATA
* * ** * * *
18317 AAAAATGGAAACAAAAGCATCAAGGGTTGCCAAATC---GACGATTCAAAACGTCACTAATGGGT
65 AACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTAATGGGC
** *
18379 CTTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGTCTAATCTCAC
130 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
* * * * *
18444 GAAAATGATAAGAGTTAGGCAATAAACAATTGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGA
195 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT-CCAAATCGAAGA
* *
18509 CGGTTCAAAAC-GATACTAATGGGCCCCGATAGGCCCATAATAACAAGTGTTCCAAATGAGCTAA
259 CGATTCAAAACGGA-ACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCT-A
18573 AAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
322 AAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAA
* * *
18638 GCATTGAGGTTTCCCAAATTGAAGACGATTCAGAACGACACTAATGGGCCCCGATAGGCCCAAAA
387 GCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAA
*
18703 TAACAATTG
452 TAACAAGTG
* *
18712 TTCCAAATGAGCTAAAAACTTCAC-GTGGACTAATCTCACGAAAATGATAATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
18776 ACAATGGAAAGAAAAGCATTGAGGTTT-CTCAAATCGAAGACGATTCAAAACGACACTAATGGGC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGC-CAAATCGAAGACGATTCAAAACGACACTAATGGGC
*
18840 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATGGACTAATCTCAC
130 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
* ** * *
18905 CAAAATGATTATAGTTAGGCCATAAACAATGGAAACAAAAGCATCAAGGGTTGCCAAATCGAATA
195 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGA-GGTTTCCAAATCGAAGA
* * *
18970 CGATTCAAGACGGAACTAAT-GGCCCCGAAAGGCCCAAAATAACAAGTGTTCTAAATGAGCTAAA
259 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCT-AA
*
19034 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGGTAGGCCATAAACAATGGAAAGAAAAG
323 AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAG
* * * * *
19099 CATCGAGGTTTCCCAAATCGAAGACGATTTAGAACGACACTAATGGGCCCCGATATGCCCAAAAT
388 CATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAAT
*
19164 AACAATTG
453 AACAAGTG
*
19172 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGGTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
*
19237 ACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAACGGA-ACTAATGGGC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GACACTAATGGGC
*
19301 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAA
130 CCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAC
* * * *
19366 CAAAATGATTACAGTTAGTCCATAACCAATGGAAAGAAAAGCCTTGAGGTTTTGCCAAATCGAAG
195 CAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGG-TTT-CCAAATCGAAG
* * *
19431 ACGATTCAAAACGGAACTAATGGGCCCCGATAGGGCCAGAATAACAAGTGTTCCAATTGAGCTAA
258 ACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAA
* * * *
19496 GAACTTCACAGTGGACAAATCTCATCAAAATGATTATAGTTAGGCCATAAACAACT-TAAAGAAT
323 -AACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAA-TGGAAAGAAA
* * * *
19560 ATCTTTGAGGTTTGCCAAATTGAAGACGATTCAAAACGGA-ACTAATGGGCCCCGATGGGCCCAA
386 AGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC-GACACTAATGGGCCCCGATAGGCCCAA
19624 AATAACAAGTG
450 AATAACAAGTG
19635 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * * *
19700 ACAACGGAAAGAAAAGCCTTGAGGTTTGCCAAATCGAAGACGATTCAAAATGTCACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTAATGGGCC
* * * *
19765 CCGATAGGCCCAAACTAACAAGTGATCCAAATGAGCTAAAAACTTAACAATGGACTAATCTCACC
131 CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
* * * *
19830 AAATTGATTATAGTTACGCCATATATAATGGAAAGAAAAAGCATTGAGGTTTGCCAAATCGAAGA
196 AAAATGATTATAGTTAGGCCATAAACAATGGAAAG-AAAAGCATTGAGGTTT-CCAAATCGAAGA
19895 CGATTCAAAACGGAACTAAT-GG-CCCGATA-G-CC-AAATAACAAGTGTTCCAAATGAGCTAAA
259 CGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAA
* * * *
19955 ACTTCACAGTGGACTAATCTCACGAAAATGATAATAGTTAGGCCATAAACACTGGAAAGAAAGGC
324 ACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC
*
20020 ATTGAGGTTT-CTCAAATCGAAGACGATTCAAAACGACACTAACGGGCCCCGATAGGCCCAAAAT
389 ATTGAGGTTTGC-CAAATCGAAGACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAAT
20084 AACAAGTG
453 AACAAGTG
* * *
20092 TTCCAAATGAGCTAAAAGCTTCACAATGGACTAGTCTCACCAAAATGATTATAGTTAGGCCATAA
1 TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
* * * *
20157 ACAATGGAAAGAAAAACATTGAGGTTTACCAAATCGAAGACGATTTAAAACGTCACTAATGGGCC
66 ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTAATGGGCC
** * *
20222 TTGACT-GGCACAAAATAACAAGTGTTCTAAATG
131 CCGA-TAGGCCCAAAATAACAAGTGTTCCAAATG
Statistics
Matches: 4579, Mismatches: 548, Indels: 336
0.84 0.10 0.06
Matches are distributed among these distances:
456 4 0.00
457 265 0.06
458 93 0.02
459 26 0.01
460 584 0.13
461 1141 0.25
462 1211 0.26
463 416 0.09
464 104 0.02
465 20 0.00
466 90 0.02
467 66 0.01
468 7 0.00
469 23 0.01
470 93 0.02
471 8 0.00
472 4 0.00
473 6 0.00
475 1 0.00
478 7 0.00
479 2 0.00
480 5 0.00
481 15 0.00
482 5 0.00
483 1 0.00
486 8 0.00
487 5 0.00
488 1 0.00
489 14 0.00
490 6 0.00
491 14 0.00
492 4 0.00
493 11 0.00
494 3 0.00
495 7 0.00
496 1 0.00
497 4 0.00
498 11 0.00
499 12 0.00
500 5 0.00
501 8 0.00
504 1 0.00
506 6 0.00
507 14 0.00
508 6 0.00
509 16 0.00
510 5 0.00
511 5 0.00
512 1 0.00
514 166 0.04
515 33 0.01
516 4 0.00
517 2 0.00
518 9 0.00
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (460 bp):
TTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAA
ACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTAATGGGCC
CCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACC
AAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCAAATCGAAGACG
ATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAC
TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCAT
TGAGGTTTGCCAAATCGAAGACGATTCAAAACGACACTAATGGGCCCCGATAGGCCCAAAATAAC
AAGTG
Found at i:17489 original size:54 final size:54
Alignment explanation
Indices: 17410--17522 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
17400 CCATAGGCCA
* * * **
17410 AAAATAACAAGTGTTGCAAATGAGCTAAAATCATCACAGTCGACTAATCTCGCC
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACATCACAGGCGACTAATCTAACC
* *
17464 AAAATAACAAGTGTTCCATATGAGCTAAAAACTTCACAGGCGACTAATCTAACC
1 AAAATAACAAGTGTTCCAAATGAGCTAAAAACATCACAGGCGACTAATCTAACC
17518 AAAAT
1 AAAAT
17523 GATTATAGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.43, C:0.21, G:0.13, T:0.22
Consensus pattern (54 bp):
AAAATAACAAGTGTTCCAAATGAGCTAAAAACATCACAGGCGACTAATCTAACC
Found at i:17616 original size:208 final size:208
Alignment explanation
Indices: 17254--17676 Score: 688
Period size: 208 Copynumber: 2.0 Consensus size: 208
17244 CCCGATAGGC
*
17254 CCAAAATAACAAGTGTTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTAACCAAAATGATT
* *
17319 ATAGTTAGTCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
66 ATAGTAAGTACATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
* * *
17384 CGGAACTAATGGGCCCCCATAGGCCAAAAATAACAAGTGTTGCAAATGAGCTAAAATCATCACAG
131 CGGAACTAATGGGCCCCCATAGGCCAAAAATAACAAGTGTTCCAAATGAGCTAAAAACATCACAA
* *
17449 TCGACTAATCTCG
196 TCAACTAATCTCA
* *
17462 CCAAAATAACAAGTGTTCCATATGAGCTAAAAACTTCACAG-GCGACTAATCTAACCAAAATGAT
1 CCAAAATAACAAGTGTTCCAAATGAGCCAAAAACTTCACAGTG-GACTAATCTAACCAAAATGAT
*
17526 TATAGTAACG-ACATAAATAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
65 TATAGTAA-GTACATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
* * *
17590 AACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
129 AACGGAACTAATGGGCCCCCATAGGCCAAAAATAACAAGTGTTCCAAATGAGCTAAAAACATCAC
17655 AATCAACTAATCTCA
194 AATCAACTAATCTCA
17670 CCAAAAT
1 CCAAAAT
17677 GATTATAATT
Statistics
Matches: 199, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
207 1 0.01
208 197 0.99
209 1 0.01
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.21
Consensus pattern (208 bp):
CCAAAATAACAAGTGTTCCAAATGAGCCAAAAACTTCACAGTGGACTAATCTAACCAAAATGATT
ATAGTAAGTACATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
CGGAACTAATGGGCCCCCATAGGCCAAAAATAACAAGTGTTCCAAATGAGCTAAAAACATCACAA
TCAACTAATCTCA
Found at i:17868 original size:153 final size:154
Alignment explanation
Indices: 17462--20254 Score: 4111
Period size: 154 Copynumber: 18.2 Consensus size: 154
17452 ACTAATCTCG
* *
17462 CCAAAATAACAAGTGTTCCATATGAGCTAAAAACTTCACAG-GCGACTAATCTAACCAAAATGAT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTG-GACTAATCTCACCAAAATGAT
* * * *
17526 TATAGTAACGACATAAATAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAA
65 TATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAA
17591 ACGGAACTAATGGGCCCCGATAGGC
130 ACGGAACTAATGGGCCCCGATAGGC
* **
17616 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATCAACTAATCTCACCAAAATGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
*
17681 ATAATTAGGCCATAAA-AATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTC-AAA
66 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
*
17744 CGGAACTAATAGGCCCCGATAGGC
131 CGGAACTAATGGGCCCCGATAGGC
* **
17768 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATCAACTAATCTCACCAAAATGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
17833 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
66 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
17898 CGGAACTAATGGGCCCCGATAGGC
131 CGGAACTAATGGGCCCCGATAGGC
*
17922 CCAAAATAACAAGTGATCCAAATGAGCTAAAAACTTACACAGTGGACTAATCTCACCAAAATGAT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTT-CACAGTGGACTAATCTCACCAAAATGAT
* * *
17987 TACAGTTACGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAA
65 TATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAA
*
18052 ACGGAACTAATCGGGCCCCGATACGC
130 ACGGAACTAAT-GGGCCCCGATAGGC
* * * *
18078 AACAAAATAAAAAGTGTTCCAGATTAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGAT
1 -CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGAT
* * * * *
18143 TACAGGTAGGCCATAAACAATGGAAAGAAAAACAATTAGAGGTTTACCAAATCGAAGACGATTTA
65 TATAGTTAGGCCATAAACAATGGAAAGAAAAGC-ATT-GAGGTTTGCCAAATCGAAGACGATTCA
* ** ** **
18208 AAATAGTCACTAATGGGCCTTGATACAC
128 AAA-CGGAACTAATGGGCCCCGATAGGC
*
18236 ACAAAATAACAAAGTGTTCCAAATGAGCTAAAAAACTTCACAGTGGACTAATCTCACCAAAATGA
1 CCAAAATAAC-AAGTGTTCCAAATGAGCT-AAAAACTTCACAGTGGACTAATCTCACCAAAATGA
* * ** *
18301 TTATAGTTAGGCCATAAAAAATGGAAACAAAAGCATCAAGGGTTGCCAAATC---GACGATTCAA
64 TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAA
** * **
18363 AACGTCACTAATGGGTCTTGATAGGC
129 AACGGAACTAATGGGCCCCGATAGGC
* * *
18389 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGTCTAATCTCACGAAAATGATA
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* * * * *
18454 AGAGTTAGGCAATAAACAATTGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGGTTCAAAA
66 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
18519 C-GATACTAATGGGCCCCGATAGGC
131 CGGA-ACTAATGGGCCCCGATAGGC
*
18543 CCATAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* * *
18608 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATTGAAGACGATTCAGAA
66 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
18673 C-GACACTAATGGGCCCCGATAGGC
131 CGGA-ACTAATGGGCCCCGATAGGC
* * *
18697 CCAAAATAACAATTGTTCCAAATGAGCTAAAAACTTCAC-GTGGACTAATCTCACGAAAATGATA
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
18761 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT-CTCAAATCGAAGACGATTCAAA
66 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGC-CAAATCGAAGACGATTCAAA
18825 AC-GACACTAATGGGCCCCGATAGGC
130 ACGGA-ACTAATGGGCCCCGATAGGC
*
18850 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAATGGACTAATCTCACCAAAATGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* ** * * *
18915 ATAGTTAGGCCATAAACAATGGAAACAAAAGCATCAAGGGTTGCCAAATCGAATACGATTCAAGA
66 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
*
18980 CGGAACTAAT-GGCCCCGAAAGGC
131 CGGAACTAATGGGCCCCGATAGGC
*
19003 CCAAAATAACAAGTGTTCTAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* * * * *
19068 ATAGGTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGTTTCCCAAATCGAAGACGATTTAGAA
66 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
*
19133 C-GACACTAATGGGCCCCGATATGC
131 CGGA-ACTAATGGGCCCCGATAGGC
*
19157 CCAAAATAACAATTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* *
19222 ATAGGTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTCCCAAATCGAAGACGATTCAAAA
66 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
19287 CGGAACTAATGGGCCCCGATAGGC
131 CGGAACTAATGGGCCCCGATAGGC
*
19311 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCAACAAAATGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* * * *
19376 ACAGTTAGTCCATAACCAATGGAAAGAAAAGCCTTGAGGTTTTGCCAAATCGAAGACGATTCAAA
66 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGG-TTTGCCAAATCGAAGACGATTCAAA
*
19441 ACGGAACTAATGGGCCCCGATAGGG
130 ACGGAACTAATGGGCCCCGATAGGC
* * * * *
19466 CCAGAATAACAAGTGTTCCAATTGAGCTAAGAACTTCACAGTGGACAAATCTCATCAAAATGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* * * * *
19531 ATAGTTAGGCCATAAACAACT-TAAAGAATATCTTTGAGGTTTGCCAAATTGAAGACGATTCAAA
66 ATAGTTAGGCCATAAACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAA
*
19595 ACGGAACTAATGGGCCCCGATGGGC
130 ACGGAACTAATGGGCCCCGATAGGC
19620 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* *
19685 ATAGTTAGGCCATAAACAACGGAAAGAAAAGCCTTGAGGTTTGCCAAATCGAAGACGATTCAAAA
66 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
* **
19750 TGTCACTAATGGGCCCCGATAGGC
131 CGGAACTAATGGGCCCCGATAGGC
* * * * *
19774 CCAAACTAACAAGTGATCCAAATGAGCTAAAAACTTAACAATGGACTAATCTCACCAAATTGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* * *
19839 ATAGTTACGCCATATATAATGGAAAGAAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAA
66 ATAGTTAGGCCATAAACAATGGAAAG-AAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAA
19904 ACGGAACTAAT-GG-CCCGATA-G-
130 ACGGAACTAATGGGCCCCGATAGGC
* *
19925 CC-AAATAACAAGTGTTCCAAATGAGCT-AAAACTTCACAGTGGACTAATCTCACGAAAATGATA
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* *
19988 ATAGTTAGGCCATAAACACTGGAAAGAAAGGCATTGAGGTTT-CTCAAATCGAAGACGATTCAAA
66 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGC-CAAATCGAAGACGATTCAAA
*
20052 AC-GACACTAACGGGCCCCGATAGGC
130 ACGGA-ACTAATGGGCCCCGATAGGC
* * *
20077 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAGCTTCACAATGGACTAGTCTCACCAAAATGATT
1 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
* * *
20142 ATAGTTAGGCCATAAACAATGGAAAGAAAAACATTGAGGTTTACCAAATCGAAGACGATTTAAAA
66 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
** **
20207 CGTCACTAATGGGCCTTGACT-GGC
131 CGGAACTAATGGGCCCCGA-TAGGC
* *
20231 ACAAAATAACAAGTGTTCTAAATG
1 CCAAAATAACAAGTGTTCCAAATG
Statistics
Matches: 2401, Mismatches: 201, Indels: 74
0.90 0.08 0.03
Matches are distributed among these distances:
147 3 0.00
148 42 0.02
149 55 0.02
150 30 0.01
151 78 0.03
152 130 0.05
153 433 0.18
154 1088 0.45
155 288 0.12
156 72 0.03
157 55 0.02
158 56 0.02
159 71 0.03
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (154 bp):
CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
CGGAACTAATGGGCCCCGATAGGC
Done.