Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017697.1 Corchorus olitorius cultivar O-4 contig17730, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4994
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30


Found at i:654 original size:15 final size:14

Alignment explanation


    Indices: 630--659  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

        620 CAATAACATC

                          
        630 AAACAAACAAAACA
          1 AAACAAACAAAACA

                           
        644 AAACGAAACAAAACA
          1 AAAC-AAACAAAACA

             
        659 A
          1 A

        660 GGCAACCAAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.27
  15   11  0.73

ACGTcount: A:0.77, C:0.20, G:0.03, T:0.00


Consensus pattern (14 bp):   
AAACAAACAAAACA
Done.