Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017703.1 Corchorus olitorius cultivar O-4 contig17736, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33220

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4952--4980
14
2.1
14
100
0
58
37
6
0
55
1.27
5382--5438
5
10.8
5
75
17
53
52
1
1
43
1.21
6865--6937
31
2.4
31
76
17
80
61
8
4
26
1.42
7878--7919
17
2.4
18
88
4
59
59
2
0
38
1.10
10635--10686
26
2.0
26
92
7
88
50
7
15
26
1.71
10672--10743
23
2.8
25
75
14
76
41
13
6
37
1.72
15424--15525
51
2.0
50
80
12
111
21
22
13
42
1.88
17562--17696
41
3.4
39
82
11
143
42
14
14
28
1.86
18399--18434
2
18.0
2
100
0
72
50
0
0
50
1.00
20510--20538
3
9.7
3
100
0
58
65
0
0
34
0.93
27349--27389
21
2.0
21
85
0
55
43
17
14
24
1.86
27865--28003
69
2.0
69
95
0
251
33
25
17
23
1.97
29947--29981
2
17.0
2
94
5
61
48
2
0
48
1.16
31224--31329
50
2.1
50
86
6
144
44
13
21
20
1.86

Tables:   1

The End!