Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017704.1 Corchorus olitorius cultivar O-4 contig17737, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 30424
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:6439 original size:22 final size:22

Alignment explanation


    Indices: 6404--6450  Score: 67
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       6394 TATAGGATGC

                           *      
       6404 TCTAAATTGAAACAACTTTCTT
          1 TCTAAATTGAAACAAATTTCTT

                 *   *            
       6426 TCTAAGTTGCAACAAATTTCTT
          1 TCTAAATTGAAACAAATTTCTT

               
       6448 TCT
          1 TCT

       6451 TCCATGACCA


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43


Consensus pattern (22 bp):   
TCTAAATTGAAACAAATTTCTT

Found at i:11865 original size:13 final size:14

Alignment explanation


    Indices: 11841--11869  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

      11831 TCCATTTTTT

                          
      11841 TATTATTAAATTTA
          1 TATTATTAAATTTA

                          
      11855 TATTA-TAAATTTA
          1 TATTATTAAATTTA

              
      11868 TA
          1 TA

      11870 CTCAAAAAAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13   10  0.67
  14    5  0.33

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (14 bp):   
TATTATTAAATTTA
Done.