Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017711.1 Corchorus olitorius cultivar O-4 contig17744, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7038
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31


Found at i:6446 original size:19 final size:19

Alignment explanation


    Indices: 6419--6464  Score: 65
    Period size: 19  Copynumber: 2.4  Consensus size: 19

       6409 GGCTCATGAG

                *        *     
       6419 CCGGCTTGGTCGGTCCGAA
          1 CCGGTTTGGTCGGACCGAA

                               
       6438 CCGGTTTGGTCGGACCGAA
          1 CCGGTTTGGTCGGACCGAA

               *    
       6457 CCGATTTG
          1 CCGGTTTG

       6465 ACCTGGTCCG


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   24  1.00

ACGTcount: A:0.13, C:0.28, G:0.35, T:0.24


Consensus pattern (19 bp):   
CCGGTTTGGTCGGACCGAA
Done.