Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017712.1 Corchorus olitorius cultivar O-4 contig17745, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69482

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3703--3769
30
2.2
31
82
12
77
29
20
17
31
1.96
4448--4482
18
1.9
18
88
11
54
85
0
11
2
0.69
4430--4490
21
3.0
21
76
11
63
77
0
13
9
1.00
4620--4650
13
2.5
12
90
10
53
29
0
0
70
0.87
4621--4653
11
2.8
12
86
13
50
33
0
0
66
0.92
7473--7566
48
2.0
48
91
0
152
30
35
9
24
1.87
9754--9808
30
1.9
29
82
10
69
45
7
3
43
1.49
9762--9848
43
2.0
43
84
6
111
43
5
5
44
1.51
10722--10884
22
7.3
22
74
12
120
39
9
14
36
1.78
10722--10905
45
4.3
43
73
13
137
39
9
15
36
1.79
14321--14376
23
2.3
24
84
6
69
69
5
5
19
1.28
21965--22008
22
2.0
22
86
0
61
25
25
22
27
2.00
21961--22063
52
2.0
52
96
0
188
26
22
26
25
2.00
32449--32484
17
2.2
16
90
9
56
5
19
38
36
1.75
33352--33389
15
2.6
15
87
4
51
47
2
7
42
1.46
33844--33905
31
2.0
31
84
12
83
30
30
25
12
1.93
34428--34477
23
2.2
22
85
3
64
66
0
8
26
1.19
35689--35719
15
2.1
15
93
0
53
51
0
0
48
1.00
54818--54916
49
2.0
49
92
0
162
49
16
10
24
1.76
55561--55664
51
2.1
51
94
1
183
27
26
9
35
1.88
57591--57616
3
8.7
3
100
0
52
69
0
30
0
0.89
58874--58918
14
3.5
12
84
9
54
31
0
11
57
1.33

Tables:   1

The End!