genome.fa.s17714.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017714.1 Corchorus olitorius cultivar O-4 contig17747, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34106

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--216	21	10.2	21	87	5	285	27	12	22	37	1.91
254--427	53	3.3	53	90	0	251	42	24	8	24	1.82
306--591	126	2.3	127	86	0	394	42	24	9	23	1.83
216--554	179	1.9	179	95	0	606	42	24	10	23	1.85
359--500	74	1.9	74	82	1	178	41	23	9	24	1.85
436--554	52	2.3	52	92	4	195	43	27	7	21	1.79
7749--7845	50	1.9	50	100	0	194	35	12	13	39	1.82
12740--12767	2	14.0	2	100	0	56	50	0	0	50	1.00
22275--22459	46	4.0	46	100	0	370	30	12	10	45	1.77
26300--26345	2	23.0	2	86	0	65	50	6	0	43	1.28
27155--27276	3	40.7	3	100	0	244	32	0	0	67	0.91
28458--28524	35	1.9	35	87	0	98	28	1	34	35	1.67
28589--28899	22	14.2	21	70	17	140	36	8	17	37	1.80
28760--28867	46	2.4	45	87	3	146	34	12	14	37	1.85
28906--28980	22	3.3	22	79	3	69	36	6	18	38	1.77
28906--28957	22	2.2	24	86	6	72	40	5	15	38	1.71
28991--29057	22	3.1	21	82	16	84	43	5	10	40	1.63
29080--29117	2	19.0	2	100	0	76	50	0	0	50	1.00
29533--29603	31	2.3	31	90	9	117	23	21	28	26	1.99
32447--32651	22	9.5	22	76	9	118	39	13	11	35	1.81
32467--32521	18	2.8	18	79	20	58	43	9	10	36	1.72
32467--32566	40	2.4	43	85	6	125	40	14	11	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32447--32565	62	1.9	63	87	1	177	41	13	10	34	1.79
32446--32613	44	3.9	44	79	6	155	38	13	11	35	1.82
32529--32673	65	2.2	65	82	6	168	37	13	11	37	1.81
32447--32673	44	5.3	44	76	8	137	39	13	11	36	1.80

Tables:   1

The End!