Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017715.1 Corchorus olitorius cultivar O-4 contig17748, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23509

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--42
2
21.0
2
100
0
84
50
0
0
50
1.00
521--574
22
2.5
22
78
6
56
33
18
3
44
1.67
791--1096
22
14.1
22
72
12
125
35
16
8
38
1.80
802--1095
44
6.8
44
74
10
187
35
15
9
39
1.79
802--1096
66
4.5
66
73
11
207
35
15
9
39
1.79
1221--1639
22
18.9
22
67
13
153
35
17
9
38
1.81
1221--1839
44
14.2
43
65
14
126
35
16
9
37
1.82
1674--1870
22
8.9
22
73
9
87
36
15
11
36
1.83
1668--1874
66
3.1
65
75
6
184
37
17
10
34
1.84
11548--11591
22
2.0
22
100
0
88
31
18
27
22
1.97
12480--12658
96
1.9
95
82
4
227
28
18
36
16
1.93
13349--13465
33
3.5
33
90
0
162
14
37
29
17
1.90
16509--16565
3
19.0
3
88
0
87
31
3
1
63
1.22
19106--19170
14
4.8
13
87
12
87
43
9
10
36
1.72
19419--19463
6
7.3
6
97
2
81
82
0
17
0
0.68
19829--19876
6
8.2
6
86
4
71
79
2
18
0
0.84
19829--19882
17
3.2
17
92
5
83
79
1
18
0
0.82
19842--19893
17
3.1
16
86
5
52
76
3
17
1
1.02
20015--20270
87
2.9
87
92
1
415
38
11
23
27
1.89
21044--21720
37
18.4
37
79
4
636
23
18
15
42
1.88
21827--22194
54
6.8
53
87
4
479
27
13
21
37
1.91
21827--22194
108
3.4
108
88
4
537
27
13
21
37
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22476--22615
7
20.0
7
94
0
181
56
22
0
20
1.47

Tables:   1

The End!