Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017717.1 Corchorus olitorius cultivar O-4 contig17750, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34597

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2338--2413
3
25.7
3
76
7
66
34
2
39
23
1.69
2712--2737
2
13.0
2
100
0
52
50
0
0
50
1.00
3624--3727
45
2.3
45
81
3
120
28
13
16
41
1.86
9901--9974
24
3.1
24
92
0
121
22
17
12
47
1.81
11148--11180
10
3.3
10
95
0
57
0
57
18
24
1.40
11499--11552
15
3.9
15
75
22
64
12
0
72
14
1.13
11499--11556
25
2.3
25
96
0
107
12
0
74
13
1.08
11498--11532
10
3.5
10
88
0
52
8
0
74
17
1.06
12109--12156
13
3.6
13
83
5
60
29
0
0
70
0.87
12113--12161
17
2.7
18
84
6
64
28
2
0
69
1.00
12113--12161
25
2.1
25
81
11
59
28
2
0
69
1.00
12821--12867
25
1.9
24
82
4
58
40
14
4
40
1.66
12896--12943
25
1.9
25
100
0
96
35
14
8
41
1.76
19738--20122
214
1.8
213
92
1
655
31
20
9
37
1.86
20874--20903
15
2.1
14
93
6
51
43
0
10
46
1.37
20929--20976
17
2.6
20
75
21
59
56
16
8
18
1.65
21796--21899
55
1.9
55
84
3
140
30
21
9
38
1.85
30417--30493
33
2.3
33
95
0
136
33
5
20
40
1.75
31473--31508
13
2.8
13
91
0
63
27
5
8
58
1.50
32770--32837
35
1.9
35
90
0
109
36
17
26
19
1.94
32825--32853
13
2.2
13
100
0
58
20
24
20
34
1.97

Tables:   1

The End!