Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017722.1 Corchorus olitorius cultivar O-4 contig17755, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48100

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
738--820
42
2.0
42
97
0
157
19
22
13
44
1.85
863--947
44
1.9
45
85
2
118
42
4
25
27
1.75
1364--1397
6
5.7
6
86
13
52
52
0
11
35
1.38
1362--1397
17
2.1
18
94
5
65
55
0
11
33
1.35
1364--1397
11
2.8
12
86
13
52
52
0
11
35
1.38
2985--3039
23
2.4
23
81
3
67
45
10
7
36
1.67
5851--5975
22
5.7
22
75
14
116
40
12
10
36
1.78
5851--5968
43
2.7
43
81
7
132
38
13
11
36
1.80
5988--6055
22
3.3
21
74
8
68
23
17
8
50
1.74
7639--7849
22
9.7
21
71
14
117
41
17
9
32
1.80
7618--7774
66
2.4
66
85
5
194
41
15
8
34
1.78
7869--8119
22
11.3
22
68
14
122
35
16
9
39
1.81
7929--8013
42
2.0
42
81
4
100
36
17
9
36
1.82
8082--8159
22
3.5
22
74
11
61
38
12
14
34
1.84
8082--8187
44
2.4
44
76
3
106
39
13
11
35
1.80
9282--9307
3
8.7
3
100
0
52
69
0
30
0
0.89
10114--10148
15
2.3
15
90
0
52
40
0
8
51
1.33
11631--11655
2
12.5
2
100
0
50
48
0
0
52
1.00
25078--25291
115
1.9
116
80
3
252
21
26
26
26
2.00
32853--32900
19
2.4
20
86
6
71
2
16
60
20
1.46
34638--34672
18
1.9
18
94
0
61
34
11
22
31
1.90
36448--36480
3
10.7
3
93
6
57
63
0
0
36
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36485--36563
24
3.2
24
62
28
56
24
8
15
51
1.71
36487--36596
51
2.1
53
93
3
188
24
8
16
50
1.72
38165--38257
42
2.2
42
94
1
159
21
12
30
35
1.91
42503--42529
2
13.5
2
100
0
54
48
0
0
51
1.00
42918--43150
22
10.6
22
69
12
138
41
11
14
33
1.81
43182--43252
22
3.2
22
82
4
72
40
5
21
32
1.76
43298--43459
22
7.4
22
74
8
116
37
9
15
38
1.79
43313--43459
44
3.4
43
74
11
129
37
10
14
37
1.81
43442--43486
22
2.1
21
84
12
56
24
13
15
46
1.82
46624--46656
16
2.1
15
94
5
57
75
6
0
18
1.00
46631--46679
21
2.4
21
77
16
57
69
4
4
22
1.23
47252--47294
21
2.2
19
83
8
50
62
2
30
4
1.28

Tables:   1

The End!