Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017727.1 Corchorus olitorius cultivar O-4 contig17760, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1676
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:1090 original size:58 final size:58

Alignment explanation


    Indices: 989--1098  Score: 159
    Period size: 58  Copynumber: 1.9  Consensus size: 58

        979 ATCATGCTTC

                 *                                *                   
        989 GGTCCTAAAACGTCTTTTTTAGGCATCTAATAAAAAAATATGTCACTCGATAAGCGTT
          1 GGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATAAGCGTT

                                  *             *           *    
       1047 GGTCCGAAAACGTCTTTTTTTATGCATCTAAT-AAAGAACATGTCACTTGATA
          1 GGTCCGAAAACGTC-TTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATA

       1099 TTTGATTAAT


Statistics
Matches: 46,  Mismatches: 5, Indels: 2
        0.87            0.09        0.04

Matches are distributed among these distances:
  58   30  0.65
  59   16  0.35

ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34


Consensus pattern (58 bp):   
GGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATAAGCGTT
Done.