Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017729.1 Corchorus olitorius cultivar O-4 contig17762, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11236
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35


Found at i:3531 original size:48 final size:50

Alignment explanation


    Indices: 3461--3556  Score: 160
    Period size: 48  Copynumber: 2.0  Consensus size: 50

       3451 CCTATGTCAC

                    *                                         
       3461 TTTCATTTTGGCCTTTTCCTTTTATTTTTGGCTAAATGGGTCAACTTCCT
          1 TTTCATTTGGGCCTTTTCCTTTTATTTTTGGCTAAATGGGTCAACTTCCT

                                   *                        
       3511 TTTC-TTTGGGCCTTTT-CTTTTCTTTTTGGCTAAATGGGTCAACTTC
          1 TTTCATTTGGGCCTTTTCCTTTTATTTTTGGCTAAATGGGTCAACTTC

       3557 TCCTTTGGTT


Statistics
Matches: 44,  Mismatches: 2, Indels: 2
        0.92            0.04        0.04

Matches are distributed among these distances:
  48   29  0.66
  49   11  0.25
  50    4  0.09

ACGTcount: A:0.12, C:0.20, G:0.16, T:0.52


Consensus pattern (50 bp):   
TTTCATTTGGGCCTTTTCCTTTTATTTTTGGCTAAATGGGTCAACTTCCT

Found at i:6766 original size:13 final size:13

Alignment explanation


    Indices: 6748--6773  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       6738 ATAAATCTGA

                         
       6748 TAACTTGTGTTAT
          1 TAACTTGTGTTAT

                         
       6761 TAACTTGTGTTAT
          1 TAACTTGTGTTAT

       6774 ATAATTTAAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54


Consensus pattern (13 bp):   
TAACTTGTGTTAT
Done.