Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017730.1 Corchorus olitorius cultivar O-4 contig17763, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27769

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2313--2348
18
2.0
18
88
0
54
22
19
8
50
1.74
5188--5260
22
3.4
22
84
5
96
36
9
13
39
1.78
5203--5345
22
6.6
22
78
7
132
41
13
10
34
1.79
5180--5284
44
2.4
43
79
14
117
38
10
11
40
1.76
5290--5345
23
2.5
22
81
13
62
46
16
10
26
1.79
5385--5433
22
2.3
22
86
10
66
34
22
2
40
1.66
5473--5551
22
3.6
22
76
6
79
44
10
8
36
1.70
5773--6045
60
4.6
60
86
3
336
34
15
16
34
1.90
6100--6322
63
3.6
63
87
2
308
30
17
16
34
1.92
14020--14104
40
2.2
39
87
6
118
29
14
14
42
1.84
18013--18043
14
2.2
14
100
0
62
38
12
0
48
1.42
18823--18855
14
2.4
14
95
5
59
48
24
0
27
1.51
22058--22104
21
2.2
21
84
0
58
29
12
6
51
1.65
22889--22914
13
2.0
13
100
0
52
23
7
15
53
1.67
24753--24911
4
42.2
4
64
16
54
25
8
2
63
1.35
24757--24863
11
9.7
11
71
15
69
27
8
0
63
1.29
24738--24870
44
3.0
44
93
0
230
27
8
0
63
1.27
24751--24958
15
14.6
15
71
11
97
27
6
1
63
1.29
24753--24944
19
10.4
19
70
16
72
27
6
2
64
1.30
24907--24956
3
16.7
3
100
0
100
32
0
0
68
0.90
24961--25021
24
2.5
24
89
5
88
22
19
1
55
1.52

Tables:   1

The End!