Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017731.1 Corchorus olitorius cultivar O-4 contig17764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 920

Length: 1534
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36


Found at i:1156 original size:58 final size:58

Alignment explanation


    Indices: 1053--1167  Score: 151
    Period size: 58  Copynumber: 2.0  Consensus size: 58

       1043 ATAGCATCAT

                      *                                               
       1053 GCCTCGGTCCTAAAACGTCTTATTTAGGCATCTAATAAAAAAACATGTCACTCGATAA
          1 GCCTCGGTCCGAAAACGTCTTATTTAGGCATCTAATAAAAAAACATGTCACTCGATAA

                *             *   *    *             *           *    
       1111 GCCTTGGTCCGAAAACGTTTGTTTTTATGCATCTAAT-AAAGAACATGTCACTTGATA
          1 GCCTCGGTCCGAAAACGTCT-TATTTAGGCATCTAATAAAAAAACATGTCACTCGATA

       1168 TTTGATTAAT


Statistics
Matches: 49,  Mismatches: 7, Indels: 2
        0.84            0.12        0.03

Matches are distributed among these distances:
  58   35  0.71
  59   14  0.29

ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31


Consensus pattern (58 bp):   
GCCTCGGTCCGAAAACGTCTTATTTAGGCATCTAATAAAAAAACATGTCACTCGATAA
Done.