Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017732.1 Corchorus olitorius cultivar O-4 contig17765, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21861

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3453--3530
2
44.0
2
68
23
50
51
1
1
46
1.17
3467--3512
19
2.4
20
82
10
60
50
0
2
47
1.13
3463--3525
31
2.1
30
87
3
90
50
1
1
46
1.20
4866--4921
24
2.3
24
90
0
85
21
16
30
32
1.95
5996--6039
14
2.9
15
80
10
54
40
11
11
36
1.77
12016--12049
16
2.1
16
100
0
68
32
11
5
50
1.63
12091--12131
20
2.0
22
90
9
68
34
19
24
21
1.97
12092--12140
20
2.3
20
83
13
55
30
24
26
18
1.98
12937--12983
24
1.9
24
86
4
67
14
10
4
70
1.31
18508--18559
26
1.9
28
88
7
81
17
13
9
59
1.60
19045--19213
86
2.0
86
95
1
304
33
11
7
47
1.66
19203--19257
22
2.5
22
77
11
60
30
9
10
49
1.69
19287--19334
23
2.2
21
85
10
62
29
10
10
50
1.70
19295--19345
23
2.2
23
82
6
68
25
7
13
52
1.67
19622--19673
22
2.4
22
93
3
88
34
9
5
50
1.59
19933--19982
21
2.4
20
80
9
64
32
10
12
46
1.74

Tables:   1

The End!