Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017733.1 Corchorus olitorius cultivar O-4 contig17766, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11707
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26


Found at i:1665 original size:24 final size:27

Alignment explanation


    Indices: 1619--1667  Score: 68
    Period size: 27  Copynumber: 1.9  Consensus size: 27

       1609 CAAAAGAAGA

                *                      
       1619 TTTTGGAAACAAATAAAATTGGTAAGT
          1 TTTTAGAAACAAATAAAATTGGTAAGT

                                     
       1646 TTTTAGAAA-AAA-AAAA-TGGTAA
          1 TTTTAGAAACAAATAAAATTGGTAA

       1668 AAAGATTTTG


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  24    6  0.29
  25    4  0.19
  26    3  0.14
  27    8  0.38

ACGTcount: A:0.51, C:0.02, G:0.16, T:0.31


Consensus pattern (27 bp):   
TTTTAGAAACAAATAAAATTGGTAAGT
Done.