genome.fa.s17737.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017737.1 Corchorus olitorius cultivar O-4 contig17770, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67458

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7720--7825	45	2.4	45	86	0	149	16	31	5	46	1.71
8683--8996	40	7.8	40	77	7	251	37	21	22	18	1.94
8683--8994	121	2.6	121	80	5	328	37	21	21	18	1.94
8664--9010	81	4.3	80	77	6	270	38	20	22	17	1.93
9013--9840	46	17.7	46	79	10	753	37	16	26	19	1.93
14880--15913	438	2.3	437	81	5	1179	42	13	13	30	1.83
18614--18685	31	2.4	30	84	6	85	41	6	16	34	1.75
19072--19108	2	18.5	2	100	0	74	48	0	0	51	1.00
30085--30128	15	2.8	16	83	16	56	6	13	6	72	1.25
31419--31469	24	2.1	24	85	7	68	3	35	5	54	1.43
31892--32163	30	9.1	30	91	0	438	47	20	12	19	1.81
32209--32825	168	3.7	169	86	4	808	34	16	20	28	1.94
32870--33047	70	2.6	70	93	0	304	29	14	29	26	1.95
34649--34722	19	3.7	19	84	12	96	13	0	8	78	0.96
34678--34719	14	2.9	15	89	7	68	11	0	9	78	0.96
34686--34718	7	4.7	7	100	0	66	12	0	12	75	1.04
35114--35158	12	3.8	12	80	13	58	13	13	0	73	1.10
35118--35158	13	3.3	13	80	13	59	12	12	0	75	1.05
39228--39271	15	2.8	16	83	16	56	6	13	6	72	1.25
39283--39311	13	2.1	14	93	6	51	48	10	20	20	1.79
40583--40633	24	2.1	24	85	7	68	3	31	7	56	1.46
52773--53448	64	10.6	64	90	1	991	34	15	22	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52773--53448	319	2.1	320	90	2	1065	34	15	22	27	1.94
63757--63815	31	1.9	31	100	0	118	22	45	16	15	1.84
66906--67458	46	12.2	46	78	9	419	21	29	16	32	1.95
66989--67390	43	9.1	43	81	7	398	20	29	16	34	1.94
66874--67454	223	2.6	223	87	5	803	21	28	16	33	1.95

Tables:   1

The End!