Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017738.1 Corchorus olitorius cultivar O-4 contig17771, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10229
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33


Found at i:1248 original size:13 final size:13

Alignment explanation


    Indices: 1230--1259  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       1220 GGTTTTACTC

                         
       1230 TGATTTATGACTT
          1 TGATTTATGACTT

                      *  
       1243 TGATTTATGATTT
          1 TGATTTATGACTT

                
       1256 TGAT
          1 TGAT

       1260 ATTAATGGTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.23, C:0.03, G:0.17, T:0.57


Consensus pattern (13 bp):   
TGATTTATGACTT
Done.