genome.fa.s17741.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017741.1 Corchorus olitorius cultivar O-4 contig17774, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56936

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2971--3018	6	7.8	6	97	2	87	81	0	18	0	0.70
4671--5421	36	21.4	35	80	6	689	19	20	17	42	1.90
4671--5423	247	3.1	246	81	3	795	19	20	17	42	1.90
5276--5330	29	1.9	28	88	3	83	16	20	21	41	1.90
5836--6277	30	14.4	30	83	6	455	19	13	18	48	1.81
5865--5941	38	2.0	38	84	0	100	18	14	18	49	1.80
5903--7170	60	21.1	60	76	11	809	20	13	17	48	1.81
5903--7170	90	14.1	90	75	10	814	20	13	17	48	1.81
6237--6315	38	2.1	38	85	0	104	20	10	17	51	1.73
6275--7170	30	29.2	30	82	8	950	20	14	17	47	1.82
6887--6965	38	2.1	38	90	0	122	18	12	17	50	1.77
6857--6990	68	2.0	68	89	2	207	18	11	19	50	1.78
6827--7013	98	1.9	98	85	6	263	20	12	18	48	1.80
7691--7786	27	3.6	27	89	0	156	18	14	20	45	1.85
15338--15654	81	3.9	81	90	0	474	24	19	24	30	1.98
29018--29455	40	11.0	40	93	1	729	29	19	29	21	1.97
31577--31605	14	2.1	14	100	0	58	0	13	6	79	0.93
46871--46952	43	1.9	43	82	9	105	71	0	8	19	1.10
47006--47062	27	2.1	27	87	6	80	61	1	7	29	1.32
48442--48766	53	6.1	54	83	8	382	30	23	19	27	1.98
48472--48766	106	2.8	107	86	6	422	30	23	18	26	1.98
48739--48911	35	4.9	35	89	1	258	36	19	15	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48895--49010	54	2.1	54	95	0	205	33	19	15	31	1.93
51031--51080	24	2.1	24	96	0	91	28	20	16	36	1.93
55455--55547	41	2.3	41	84	3	125	27	12	9	49	1.72

Tables:   1

The End!