Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017743.1 Corchorus olitorius cultivar O-4 contig17776, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7944
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29


Found at i:4133 original size:30 final size:31

Alignment explanation


    Indices: 4099--4167  Score: 122
    Period size: 30  Copynumber: 2.3  Consensus size: 31

       4089 CGCCGCTGTT

                                           
       4099 GGGGAAGGGTAACTTTTTCTGGTATTTGCC-
          1 GGGGAAGGGTAACTTTTTCTGGTATTTGCCA

                                   *       
       4129 GGGGAAGGGTAACTTTTTCTGGTCTTTGCCA
          1 GGGGAAGGGTAACTTTTTCTGGTATTTGCCA

                    
       4160 GGGGAAGG
          1 GGGGAAGG

       4168 AAAAATAGAC


Statistics
Matches: 37,  Mismatches: 1, Indels: 1
        0.95            0.03        0.03

Matches are distributed among these distances:
  30   29  0.78
  31    8  0.22

ACGTcount: A:0.17, C:0.13, G:0.38, T:0.32


Consensus pattern (31 bp):   
GGGGAAGGGTAACTTTTTCTGGTATTTGCCA

Done.