Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017745.1 Corchorus olitorius cultivar O-4 contig17778, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31740

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
844--919
28
2.8
28
79
2
82
30
21
10
38
1.87
1329--1371
12
3.4
12
81
9
50
34
0
11
53
1.37
6469--6580
27
4.5
26
76
14
103
28
6
0
64
1.24
6472--6575
46
2.3
46
91
1
165
28
6
0
63
1.26
7831--7892
28
2.3
27
82
2
70
27
22
12
37
1.91
11261--11310
25
2.0
25
96
0
91
32
20
10
38
1.85
11474--11498
12
2.1
12
100
0
50
24
8
8
60
1.52
14259--14374
39
2.9
39
88
3
171
19
37
18
25
1.94
14400--14475
13
5.7
13
70
11
55
13
17
22
47
1.81
14400--14484
27
3.2
27
90
3
129
12
16
23
47
1.81
20194--20470
40
7.0
40
84
0
317
22
27
18
32
1.97
22562--22601
15
2.6
16
88
4
55
15
10
12
62
1.54
22968--23032
24
2.7
24
72
15
62
44
6
12
36
1.67
25122--25163
21
2.0
21
85
4
57
14
21
33
30
1.93
26163--26211
26
1.9
25
87
4
71
16
20
10
53
1.72
28754--28842
15
5.9
15
79
10
85
12
25
24
37
1.91
30058--30145
18
4.9
18
88
0
131
12
21
40
25
1.88
30678--30819
49
3.0
47
83
11
164
51
6
15
26
1.67

Tables:   1

The End!