Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017746.1 Corchorus olitorius cultivar O-4 contig17779, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2043
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36


Found at i:1274 original size:30 final size:29

Alignment explanation


    Indices: 1231--1287  Score: 78
    Period size: 30  Copynumber: 1.9  Consensus size: 29

       1221 TTTAATTTTT

                                          
       1231 TTTTGAGTCTTGCGTCAAAGAAAAAAAAAG
          1 TTTTGAGTCTTGCGTCAAA-AAAAAAAAAG

                 *  *       *          
       1261 TTTTGTGTTTTGCGTCGAAAAAAAAAA
          1 TTTTGAGTCTTGCGTCAAAAAAAAAAA

       1288 TATATTTTGC


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  29    8  0.33
  30   16  0.67

ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32


Consensus pattern (29 bp):   
TTTTGAGTCTTGCGTCAAAAAAAAAAAAG
Done.