Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017750.1 Corchorus olitorius cultivar O-4 contig17783, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 898

Length: 1498
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31


Found at i:167 original size:15 final size:16

Alignment explanation


    Indices: 147--176  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        137 TGTAAGTTTA

                            
        147 TCAAAA-ATCAATTTT
          1 TCAAAAGATCAATTTT

                           
        162 TCAAAAGATCAATTT
          1 TCAAAAGATCAATTT

        177 GAATTCACAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37


Consensus pattern (16 bp):   
TCAAAAGATCAATTTT

Found at i:1114 original size:11 final size:11

Alignment explanation


    Indices: 1098--1122  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       1088 GGGGAATAAT

                       
       1098 CAATCCAAAAA
          1 CAATCCAAAAA

                       
       1109 CAATCCAAAAA
          1 CAATCCAAAAA

               
       1120 CAA
          1 CAA

       1123 ACAATTTTCT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.64, C:0.28, G:0.00, T:0.08


Consensus pattern (11 bp):   
CAATCCAAAAA
Done.