Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017752.1 Corchorus olitorius cultivar O-4 contig17785, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10809
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:7659 original size:3 final size:3

Alignment explanation


    Indices: 7651--7704  Score: 63
    Period size: 3  Copynumber: 18.0  Consensus size: 3

       7641 TCTTTCGTTG

                                 *       *            *       *           *
       7651 CTT CTT CTT CTT CTT CGT CTT CGT CTT CTT CTC CTT CTC CTT CTT CTG
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT

                   
       7699 CTT CTT
          1 CTT CTT

       7705 AATCCACCGT


Statistics
Matches: 41,  Mismatches: 10, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
   3   41  1.00

ACGTcount: A:0.00, C:0.37, G:0.06, T:0.57


Consensus pattern (3 bp):   
CTT

Done.