Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017753.1 Corchorus olitorius cultivar O-4 contig17786, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20424

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3002--3069
32
2.1
32
100
0
136
30
14
11
42
1.82
8110--8138
9
3.2
9
100
0
58
24
0
41
34
1.55
11018--11075
28
2.1
29
93
6
102
13
44
8
32
1.75
11433--11470
20
1.9
20
84
10
51
23
23
31
21
1.98
14241--14417
93
1.9
93
90
2
284
52
1
12
33
1.49
14416--14477
31
2.0
31
93
0
106
41
6
22
29
1.78
18766--18821
21
2.6
21
83
11
60
39
8
14
37
1.77
18803--18852
26
1.9
26
91
0
82
30
10
32
28
1.89
18608--18907
22
13.3
22
70
17
147
39
10
17
32
1.84
18952--19089
22
6.3
22
78
4
136
31
11
15
40
1.84
18964--19089
66
1.9
65
82
4
155
34
11
14
39
1.83
18952--19125
22
8.1
21
73
15
108
32
12
14
41
1.82
19698--19756
11
5.1
11
74
11
55
28
3
1
66
1.18

Tables:   1

The End!