Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017755.1 Corchorus olitorius cultivar O-4 contig17788, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123730

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68--6273
334
18.4
334
81
6
6387
34
17
16
31
1.92
1488--6273
335
14.2
334
84
4
5680
35
16
15
31
1.91
6212--6367
84
1.9
84
82
5
199
30
18
12
37
1.88
6537--6701
81
2.0
81
95
0
294
49
15
11
23
1.77
41960--42035
38
2.0
38
92
0
125
23
25
25
26
2.00
58695--58827
63
2.1
63
84
2
169
21
24
20
33
1.97
58992--59126
63
2.1
63
86
0
180
20
23
22
33
1.97
58535--59719
297
4.0
297
93
0
1960
20
22
19
37
1.94
59275--59422
63
2.3
63
83
2
172
18
23
21
35
1.95
59596--59741
63
2.3
63
84
2
186
18
24
17
39
1.92
58535--59719
593
2.0
594
92
0
1980
20
22
19
37
1.94
62654--62681
13
2.2
13
100
0
56
50
28
7
14
1.69
64788--65320
288
1.9
288
87
1
782
21
28
12
38
1.89
93411--93463
21
2.5
21
90
0
79
37
26
11
24
1.89
113982--114023
19
2.2
19
95
0
75
19
19
33
28
1.96

Tables:   1

The End!