Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017756.1 Corchorus olitorius cultivar O-4 contig17789, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17526
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:11 original size:2 final size:2

Alignment explanation


    Indices: 5--60  Score: 112
    Period size: 2  Copynumber: 28.0  Consensus size: 2

          1 TACG

                                                                          
          5 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                                
         47 TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC

         61 ATTCTTATTA


Statistics
Matches: 54,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   54  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
TC

Done.