Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001776.1 Corchorus olitorius cultivar O-4 contig01776, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1895
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35


Found at i:433 original size:36 final size:35

Alignment explanation


    Indices: 386--481  Score: 140
    Period size: 34  Copynumber: 2.7  Consensus size: 35

        376 AAAAAACGAA

                              *             *  *
        386 TGGGAACTTTCCCAATTTTAAAACTTAAAAGCTTGT
          1 TGGGAACTTTCCCAATTTAAAAACTTAAAA-CCTGG

                                               
        422 TGGGAACTTTCCCAATTTAAAAAC-TAAAACCTGG
          1 TGGGAACTTTCCCAATTTAAAAACTTAAAACCTGG

                              *       
        456 TGGGAACTTTCCCAATTTGAAAACTT
          1 TGGGAACTTTCCCAATTTAAAAACTT

        482 CGAAGACTGA


Statistics
Matches: 55,  Mismatches: 4, Indels: 3
        0.89            0.06        0.05

Matches are distributed among these distances:
  34   26  0.47
  35    6  0.11
  36   23  0.42

ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Consensus pattern (35 bp):   
TGGGAACTTTCCCAATTTAAAAACTTAAAACCTGG

Done.