Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017761.1 Corchorus olitorius cultivar O-4 contig17794, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20570
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Found at i:1280 original size:667 final size:658
Alignment explanation
Indices: 3--1856 Score: 2505
Period size: 667 Copynumber: 2.8 Consensus size: 658
1 AT
* * * * * * * *
3 TTTTTTCTAAAATTTTAGTCGAAATCGTGAAATAACCATCACGG-TTAT-GCTTAAAAGGCGTTG
1 TTTTTTC-AAAATTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTT
* * * * *
66 CGGGGCCCCGTCTTAGTTTTGCATGATTTTTGGCACCAAGACCCCATGAAATATCTATATTCATC
65 CGGGACCCAG-CTTAGTTTTGCATGATTTTTGGCGCCGAGACTCCATGAAATATCTATATTCATC
* * *
131 TAATCAAATATC-ACCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCG
129 TAATCAAATTTCTA-CCACATTGAATTTAA-G-TTTTTTTTTACGAGCATCTGAATCTTATTTCG
* * * * * *
195 ATTTAATTAGAAATTAATTCAAAAAAATATGGAAAACGTTATTAAATGTGTGAAAAGTCCTCCAA
191 ATTTAATTAGAAATTAATTCAAGAAAATATGAAAAACGATATTAAAAGAGTGAAAATTCCTCCAA
* * * * * *
260 TCTTT-TTGGCATTGAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGACT-GAAAAATT
256 TCTTTGTTGACGTT-AA-AATATATATATTATGAGTATTTTAGCCAAAAATTGA-TAGAAAATTT
* ** * * * * *
323 TTTCGGGTCA-CCTTTTGCAAAAGTTTAGCGGAAATCGT-ATACTAACCATCACGGTCTTTGGCT
318 TTTTGGGTCATTTTTTTG-TAAA-TTTTGCCGAAATCGTGA-ACTAACCATCACGGTTTTTGACT
* * * *
386 AAAAACGCGTTTCGTGACCCC-TGCTTAGTTTTGCATGATTTTTTGTGCATCGAGACTCCATTAA
380 AAAAAGGCGTTTCGGGGCCCCGT-CTTAGTTTTGCATGA-TTTTTG-GCA-CGAGACTCCATGAA
*
450 ATATCTATATTCATCTAATCAAATATCAACCACATTGAATTAAAGGATTTGTTTTTACGAGCATC
441 ATATCTATATTCATCTAATCAAATATCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATC
* * * *
515 TGAATCTTGTTTCGATTTAATCAGAAATTAATTAGTAAATATATGAAAAACGATATTAAAAGTGT
506 TGAATCTTGTTTCAATTTAATCACAAATTAATTAGAAAAAATATGAAAAACGATATTAAAAGTGT
*
580 GAAAAGTCCTCCAATGTTTTTGGCGTCAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATT
571 GAAAAGTCCTCCAATATTTTTGGCGTCAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATT
645 GACGAAAAAATTTTTCGGGTCAC
636 GACGAAAAAATTTTTCGGGTCAC
668 TTTTTTCAAAATTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTTC
1 TTTTTTCAAAATTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTTC
* *
733 GGGACCCTAGCTTAGTTTTGCATGATTTTTTGCGCCGAGACTCCATGAAATATCTATATTCATAT
66 GGGACCC-AGCTTAGTTTTGCATGATTTTTGGCGCCGAGACTCCATGAAATATCTATATTCATCT
*
798 ACTCAAATTTCTACCACATTGAATTTAAGTTTATTTTTTACGAGCATCTGAATCTTATTTCGATT
130 AATCAAATTTCTACCACATTGAATTTAAGTTT-TTTTTTACGAGCATCTGAATCTTATTTCGATT
* *
863 TAATTAGAAATTAATT-AAGGAAAATATGAAAAAACAATATTAAAAGAGTGAAAATTCCTCGAAT
194 TAATTAGAAATTAATTCAA-GAAAATATG-AAAAACGATATTAAAAGAGTGAAAATTCCTCCAAT
927 CATTTGTTGACGTTAAAATATATATATTATGAGTATTTTAGCC-AAAATTGATAGAAAATTTTTT
257 C-TTTGTTGACGTTAAAATATATATATTATGAGTATTTTAGCCAAAAATTGATAGAAAATTTTTT
* * *
991 TGGGTCATTTTTTTGTAAATTTTTTGCTGAAATCGTGAATTAACCATCACGGTTTTTTTGCCTAA
321 TGGGTCATTTTTTTGTAAA--TTTTGCCGAAATCGTGAACTAACCATCACGG--TTTTTGACTAA
*
1056 AAAGGCGTTTCGGGGCCCCGTCTTAAGTTTTCCATGATTTTTGGCACGGAGACTCCATGAAATAT
382 AAAGGCGTTTCGGGGCCCCGTCTT-AGTTTTGCATGATTTTTGGCAC-GAGACTCCATGAAATAT
** *
1121 CTATATTCATCTAATCAAATATCAGTCACATTGAATTTAAGGATTTGTTTTTATGAGCATCTGAA
445 CTATATTCATCTAATCAAATATCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAA
*
1186 TAC-TGTTTCAATTTAATTACAAATTAATTCA-AAAAAATATGAAAAACGATATTAAAAGTGTGA
510 T-CTTGTTTCAATTTAATCACAAATTAATT-AGAAAAAATATGAAAAACGATATTAAAAGTGTGA
*
1249 AAAGTCCTCCAATATTTTTGGCGTTAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGA
573 AAAGTCCTCCAATATTTTTGGCGTCAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGA
* *
1314 CGGACAAATTTTTCGGGTCAC
638 CGAAAAAATTTTTCGGGTCAC
* * * * *
1335 TTTTTGCGAAATTTTAGCCGAAATCGTGTACTAATTTATCACGATTTTTGGCTAAAAACGCATTT
1 TTTTTTCAAAATTTTAGCCGAAATCGTGTACTAA-TCATCACGGTTTTTGGCTAAAAACGCGTTT
* *
1400 CAGGACCCCGGCTTAGTTTTGCATGATTTTTGGCGCCGAGACTCCATGAAATATCTATATTCATC
65 CGGGA-CCCAGCTTAGTTTTGCATGATTTTTGGCGCCGAGACTCCATGAAATATCTATATTCATC
* * * * *
1465 TAATCAAATTTTTGCCACATTGAATTTTAGTTTTTGTTTTCACGAGCATTTGAATCTTCTTTCGA
129 TAATCAAATTTCTACCACATTGAATTTAAGTTTTT-TTTT-ACGAGCATCTGAATCTTATTTCGA
* * *
1530 TTTAATCAAAAATTAATTCAAGAAAATATGAAAAACGATATTAAAAGCGTGAAAATTCCTCCAAT
192 TTTAATTAGAAATTAATTCAAGAAAATATGAAAAACGATATTAAAAGAGTGAAAATTCCTCCAAT
* * *
1595 CTTTTGTTGACGTTAAATTATATATATTATGACTATTTTAGCCAAAAATTGACAGAAAATTTTTT
257 C-TTTGTTGACGTTAAAATATATATATTATGAGTATTTTAGCCAAAAATTGATAGAAAATTTTTT
* * * *
1660 TGGGTCATTTTTTTTGTAAA-ATTGCCGAAATCGTGAACTAACCATAAAGATTTTTGACTAAAAA
321 TGGGTCA-TTTTTTTGTAAATTTTGCCGAAATCGTGAACTAACCATCACGGTTTTTGACTAAAAA
* *
1724 GGTGTTT-TGGG-CCCGTCTTAGTTTTGCATGATTTTTGGCACCGAGACTCCATGAAATATCTAT
385 GGCGTTTCGGGGCCCCGTCTTAGTTTTGCATGATTTTTGGCA-CGAGACTCCATGAAATATCTAT
1787 ATTCATCTAATCAAATATCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTT
449 ATTCATCTAATCAAATATCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTT
*
1852 ATTTC
514 GTTTC
1857 GTCTAAGGCA
Statistics
Matches: 1061, Mismatches: 99, Indels: 61
0.87 0.08 0.05
Matches are distributed among these distances:
661 1 0.00
662 105 0.10
663 9 0.01
664 41 0.04
665 111 0.10
666 178 0.17
667 282 0.27
668 231 0.22
669 89 0.08
670 14 0.01
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (658 bp):
TTTTTTCAAAATTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTTC
GGGACCCAGCTTAGTTTTGCATGATTTTTGGCGCCGAGACTCCATGAAATATCTATATTCATCTA
ATCAAATTTCTACCACATTGAATTTAAGTTTTTTTTTACGAGCATCTGAATCTTATTTCGATTTA
ATTAGAAATTAATTCAAGAAAATATGAAAAACGATATTAAAAGAGTGAAAATTCCTCCAATCTTT
GTTGACGTTAAAATATATATATTATGAGTATTTTAGCCAAAAATTGATAGAAAATTTTTTTGGGT
CATTTTTTTGTAAATTTTGCCGAAATCGTGAACTAACCATCACGGTTTTTGACTAAAAAGGCGTT
TCGGGGCCCCGTCTTAGTTTTGCATGATTTTTGGCACGAGACTCCATGAAATATCTATATTCATC
TAATCAAATATCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCAA
TTTAATCACAAATTAATTAGAAAAAATATGAAAAACGATATTAAAAGTGTGAAAAGTCCTCCAAT
ATTTTTGGCGTCAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGACGAAAAAATTTTT
CGGGTCAC
Found at i:1486 original size:333 final size:331
Alignment explanation
Indices: 11--1857 Score: 2297
Period size: 334 Copynumber: 5.6 Consensus size: 331
1 ATTTTTTTCT
* * * * * * * * *
11 AAAATTTTAGTCGAAATCGTGAAATAACCATCACG-GTTAT-GCTTAAAAGGCGTTGCGGGGCCC
1 AAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGGACCC
* * *
74 CGTCTTAGTTTTGCATGATTTTTGGCACCAAGACCCCATGAAATATCTATATTCATCTAATCAAA
66 CGGCTTAGTTTTGCATGATTTTTGGCACCGAGACTCCATGAAATATCTATATTCATCTAATCAAA
* *
139 TATCACCCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTA
131 TATCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
* * * *
204 GAAATTAATTCAAAAAAATATGGAAAACGTTATTAAATGTGTGAAAAGTCCTCCAATCTTTTTGG
196 GAAATTAATTCAAAAAAATATGAAAAACGATATTAAAAGTGTGAAAAGTCCTCCAATATTTTTGG
* * *
269 CATTGAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGACTGAAAAATTTTTCGGGTCAC
261 CGTTAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGACAG-AAAATTTTTCGGGTCAC
*
334 CTTTTGC
325 TTTTTGC
* * * * * *
341 AAAAGTTTAGCGGAAATCGTATACTAACCATCACGGTCTTTGGCTAAAAACGCGTTTCGTGACCC
1 AAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGGACCC
* * *
406 CTGCTTAGTTTTGCATGATTTTTTGTGCATCGAGACTCCATTAAATATCTATATTCATCTAATCA
66 CGGCTTAGTTTTGCATGA-TTTTTG-GCACCGAGACTCCATGAAATATCTATATTCATCTAATCA
*
471 AATATCAACCACATTGAATTAAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT
129 AATATCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAAT
* * * *
536 CAGAAATTAATT-AGTAAATATATGAAAAACGATATTAAAAGTGTGAAAAGTCCTCCAATGTTTT
194 TAGAAATTAATTCA-AAAAAATATGAAAAACGATATTAAAAGTGTGAAAAGTCCTCCAATATTTT
* *
600 TGGCGTCAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGACGAAAAAATTTTTCGGGT
258 TGGCGTTAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGAC-AGAAAATTTTTCGGGT
*
665 CACTTTTTTC
322 CACTTTTTGC
* *
675 AAAATTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGACCC
1 AAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGGACCC
** * * * *
740 TAGCTTAGTTTTGCATGATTTTTTGCGCCGAGACTCCATGAAATATCTATATTCATATACTCAAA
66 CGGCTTAGTTTTGCATGATTTTTGGCACCGAGACTCCATGAAATATCTATATTCATCTAATCAAA
* * * *
805 TTTCTACCACATTGAATTTAA-G-TTTATTTTTTACGAGCATCTGAATCTTATTTCGATTTAATT
131 TATCAACCACATTGAATTTAAGGATTT-GTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
* * * * *
868 AGAAATTAATT-AAGGAAAATATGAAAAAACAATATTAAAAGAGTGAAAATTCCTCGAATCATTT
195 AGAAATTAATTCAA-AAAAATATG-AAAAACGATATTAAAAGTGTGAAAAGTCCTCCAAT-ATTT
* * * * *
932 GTTGACGTTAAA--ATATATATATTATGAGTATTTTAGCC-AAAATTGATAGAAAATTTTTTTGG
257 -TTGGCGTTAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGACAGAAAA-TTTTTCGG
* *
994 GTCATTTTTTTGT
320 GTCA-CTTTTTGC
* * * * * * * * *
1007 AAATTTTTTGCTGAAATCGTGAATTAACCATCACGGTTTTTTTGCCTAAAAAGGCGTTTCGGGGC
1 AAAATTTTAGCCGAAATCGTGTACTAACCATCAC-G-ATTTTTGGCTAAAAACGCGTTTCGGGAC
* * *
1072 CCCGTCTTAAGTTTTCCATGATTTTTGGCACGGAGACTCCATGAAATATCTATATTCATCTAATC
64 CCCGGCTT-AGTTTTGCATGATTTTTGGCACCGAGACTCCATGAAATATCTATATTCATCTAATC
** * *
1137 AAATATCAGTCACATTGAATTTAAGGATTTGTTTTTATGAGCATCTGAATAC-TGTTTCAATTTA
128 AAATATCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAAT-CTTGTTTCGATTTA
*
1201 ATTACAAATTAATTCAAAAAAATATGAAAAACGATATTAAAAGTGTGAAAAGTCCTCCAATATTT
192 ATTAGAAATTAATTCAAAAAAATATGAAAAACGATATTAAAAGTGTGAAAAGTCCTCCAATATTT
*
1266 TTGGCGTTAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGACGGACAAATTTTTCGGG
257 TTGGCGTTAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGACAGA-AAATTTTTCGGG
1331 TCACTTTTTGC
321 TCACTTTTTGC
* ** * *
1342 GAAATTTTAGCCGAAATCGTGTACTAATTTATCACGATTTTTGGCTAAAAACGCATTTCAGGACC
1 AAAATTTTAGCCGAAATCGTGTACTAA-CCATCACGATTTTTGGCTAAAAACGCGTTTCGGGACC
*
1407 CCGGCTTAGTTTTGCATGATTTTTGGCGCCGAGACTCCATGAAATATCTATATTCATCTAATCAA
65 CCGGCTTAGTTTTGCATGATTTTTGGCACCGAGACTCCATGAAATATCTATATTCATCTAATCAA
* *** * ** * * * *
1472 ATTTTTGCCACATTGAATTTTAGTTTTTGTTTTCACGAGCATTTGAATCTTCTTTCGATTTAATC
130 ATATCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
* * * * *
1537 AAAAATTAATTCAAGAAAATATGAAAAACGATATTAAAAGCGTGAAAATTCCTCCAATCTTTTGT
195 AGAAATTAATTCAAAAAAATATGAAAAACGATATTAAAAGTGTGAAAAGTCCTCCAAT-ATTT-T
* * * * *
1602 TGACGTTAAA-T-TATATATATTATGACTATTTTAGCCAAAAATTGACAGAAAATTTTTTTGGGT
258 TGGCGTTAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGACAGAAAA-TTTTTCGGGT
* *
1665 CATTTTTTTTGT
322 CA--CTTTTTGC
* * * * * * *
1677 AAAA--TT-GCCGAAATCGTGAACTAACCATAAAGATTTTTGACTAAAAAGGTGTTTTGGG--CC
1 AAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGGACCC
*
1737 CGTCTTAGTTTTGCATGATTTTTGGCACCGAGACTCCATGAAATATCTATATTCATCTAATCAAA
66 CGGCTTAGTTTTGCATGATTTTTGGCACCGAGACTCCATGAAATATCTATATTCATCTAATCAAA
*
1802 TATCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTATTTCG
131 TATCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCG
1858 TCTAAGGCAA
Statistics
Matches: 1302, Mismatches: 184, Indels: 63
0.84 0.12 0.04
Matches are distributed among these distances:
329 111 0.09
330 37 0.03
331 99 0.08
332 197 0.15
333 232 0.18
334 369 0.28
335 172 0.13
336 76 0.06
337 9 0.01
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (331 bp):
AAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGGACCC
CGGCTTAGTTTTGCATGATTTTTGGCACCGAGACTCCATGAAATATCTATATTCATCTAATCAAA
TATCAACCACATTGAATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
GAAATTAATTCAAAAAAATATGAAAAACGATATTAAAAGTGTGAAAAGTCCTCCAATATTTTTGG
CGTTAAACTATATGTATTTTATGAGTATTTTAGCCAAAAATTGACAGAAAATTTTTCGGGTCACT
TTTTGC
Found at i:6312 original size:29 final size:28
Alignment explanation
Indices: 6268--6322 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
6258 AACTTGCACG
*
6268 ATTTTGACGTTTTACCCCTTAAACTTTA
1 ATTTTGACATTTTACCCCTTAAACTTTA
*
6296 ATTTTGGACATTTTACCCCTTGAACTT
1 ATTTT-GACATTTTACCCCTTAAACTT
6323 GCAATTTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.24, C:0.22, G:0.09, T:0.45
Consensus pattern (28 bp):
ATTTTGACATTTTACCCCTTAAACTTTA
Found at i:6330 original size:29 final size:29
Alignment explanation
Indices: 6246--6330 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 29
6236 TTAATGCCCT
* * * *
6246 TTTTTCCCCCTAAACTTGCACGATTTTGACG
1 TTTTACCCCTTAAACTTGCA--ATTTGGACA
*
6277 TTTTACCCCTTAAACTT-TAATTTTGGACA
1 TTTTACCCCTTAAACTTGCAA-TTTGGACA
*
6306 TTTTACCCCTTGAACTTGCAATTTG
1 TTTTACCCCTTAAACTTGCAATTTG
6331 AAGCCATTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
28 1 0.02
29 26 0.58
30 3 0.07
31 15 0.33
ACGTcount: A:0.22, C:0.25, G:0.11, T:0.42
Consensus pattern (29 bp):
TTTTACCCCTTAAACTTGCAATTTGGACA
Found at i:6465 original size:29 final size:30
Alignment explanation
Indices: 6432--6510 Score: 90
Period size: 29 Copynumber: 2.6 Consensus size: 30
6422 TTCCAAATTG
*
6432 CAAGTTTATGGGGCAAAACGTCCAAAAT-TA
1 CAAGTTTAAGGGGCAAAACGT-CAAAATCTA
*
6462 -AAGTTTAAGAGGCAAAACGTCAAAATCGTA
1 CAAGTTTAAGGGGCAAAACGTCAAAATC-TA
*
6492 CAAGTTTAGGGGGGCAAAA
1 CAAGTTTA-AGGGGCAAAA
6511 GGGCATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 6 0.15
29 18 0.44
30 2 0.05
31 7 0.17
32 8 0.20
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (30 bp):
CAAGTTTAAGGGGCAAAACGTCAAAATCTA
Found at i:16779 original size:24 final size:25
Alignment explanation
Indices: 16745--16799 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
16735 TCACTTTGCA
*
16745 TGCACC-CTTTTATTTTGATCGCTT
1 TGCACCTCTTTTATTTTGATCACTT
*
16769 TGCACCTTTTTTATTTTGATCACTT
1 TGCACCTCTTTTATTTTGATCACTT
*
16794 TACACC
1 TGCACC
16800 CTAATGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.16, C:0.25, G:0.09, T:0.49
Consensus pattern (25 bp):
TGCACCTCTTTTATTTTGATCACTT
Found at i:16786 original size:25 final size:25
Alignment explanation
Indices: 16752--16799 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
16742 GCATGCACCC
* *
16752 TTTTATTTTGATCGCTTTGCACCTT
1 TTTTATTTTGATCACTTTACACCTT
16777 TTTTATTTTGATCACTTTACACC
1 TTTTATTTTGATCACTTTACACC
16800 CTAATGTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.17, C:0.21, G:0.08, T:0.54
Consensus pattern (25 bp):
TTTTATTTTGATCACTTTACACCTT
Done.