Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017764.1 Corchorus olitorius cultivar O-4 contig17797, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53480

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
381--405
13
1.9
13
100
0
50
40
32
4
24
1.73
6569--6756
31
6.1
31
82
6
193
34
27
23
14
1.94
7346--7404
28
2.1
27
87
6
82
30
11
10
47
1.73
17775--17828
19
2.7
19
85
5
72
35
11
24
29
1.90
29942--29977
17
2.1
17
100
0
72
25
16
11
47
1.79
30691--30828
60
2.3
60
92
0
231
36
16
19
26
1.93
30728--30829
31
3.4
31
68
5
82
38
17
19
24
1.93
30699--30797
29
3.3
29
70
5
99
33
16
22
28
1.95
30876--31006
60
2.2
60
91
0
208
30
17
18
33
1.94
30905--31011
29
3.6
29
69
12
92
32
18
16
31
1.94
32173--32209
17
2.2
17
100
0
74
27
24
16
32
1.96
40214--40246
12
2.6
13
90
9
59
30
12
15
42
1.83
44915--48842
650
6.0
658
76
9
3121
35
15
15
33
1.89
44915--48842
331
12.0
331
76
8
3096
35
15
15
33
1.89
48845--48888
12
3.6
12
84
6
61
29
22
9
38
1.85
52714--52768
27
2.0
27
100
0
110
29
14
7
49
1.70

Tables:   1

The End!