Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017769.1 Corchorus olitorius cultivar O-4 contig17802, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 745

Length: 1242
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1107 original size:2 final size:2

Alignment explanation


    Indices: 1100--1130  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       1090 CACGTGTATG

                                                          
       1100 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1131 TAGTATTATG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:1217 original size:29 final size:29

Alignment explanation


    Indices: 1175--1238  Score: 101
    Period size: 29  Copynumber: 2.2  Consensus size: 29

       1165 TAATCATTAA

                  *          * *         
       1175 AATTCCGTCTACCAATATATGTGCTACAT
          1 AATTCCATCTACCAATAAACGTGCTACAT

                                         
       1204 AATTCCATCTACCAATAAACGTGCTACAT
          1 AATTCCATCTACCAATAAACGTGCTACAT

                  
       1233 AATTCC
          1 AATTCC

       1239 TTAT


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  29   32  1.00

ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31


Consensus pattern (29 bp):   
AATTCCATCTACCAATAAACGTGCTACAT
Done.