Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017770.1 Corchorus olitorius cultivar O-4 contig17803, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8549

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
838--876
3
13.0
3
88
0
60
33
5
0
61
1.18
838--872
15
2.3
15
100
0
70
34
5
0
60
1.21
938--966
15
1.9
15
100
0
58
20
13
24
41
1.89
967--1014
15
3.4
15
68
26
50
43
4
20
31
1.71
964--1019
27
2.1
27
100
0
112
39
7
17
35
1.78
1137--1187
24
2.1
24
85
7
68
50
0
7
41
1.31
1350--1390
6
6.7
6
97
2
73
48
0
14
36
1.44
2671--2735
31
2.1
30
82
2
76
13
15
29
41
1.86
4892--4984
48
1.9
48
93
0
159
21
24
8
45
1.80
4907--4981
23
3.2
22
71
14
69
18
24
8
49
1.74
6630--6763
49
2.6
51
88
3
200
37
20
16
26
1.93
6738--6790
27
2.0
27
92
0
88
39
20
22
16
1.92
6686--6843
79
2.0
80
87
1
228
38
20
17
24
1.93
6768--6860
28
3.4
28
66
8
84
36
21
13
27
1.92
7213--7243
13
2.4
13
94
0
53
45
6
29
19
1.75
7578--7615
19
2.0
20
89
5
60
50
10
2
36
1.51

Tables:   1

The End!