Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017771.1 Corchorus olitorius cultivar O-4 contig17804, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59716

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7389--8071
226
3.0
226
100
0
1366
25
21
17
35
1.95
19528--19733
30
6.7
30
81
6
225
33
19
16
30
1.94
40971--41009
14
2.9
13
80
3
51
53
2
2
41
1.28
40995--41252
134
2.0
127
83
9
328
51
1
10
36
1.45
42853--43366
259
2.0
260
98
0
1003
46
7
13
33
1.69
45193--45287
50
1.9
50
89
4
147
20
18
11
49
1.78
49467--49531
28
2.4
27
86
2
85
63
1
10
24
1.36
49485--49640
31
5.0
30
71
23
92
63
1
8
26
1.31
49500--49550
19
2.9
18
75
16
54
62
3
5
27
1.36
49518--49627
27
4.4
27
70
23
87
62
0
9
27
1.31
49486--49753
46
6.0
47
86
5
267
63
0
10
25
1.32
49558--49727
43
3.9
43
90
6
245
62
0
12
25
1.30
49559--49743
19
9.2
19
66
27
73
62
0
11
25
1.29
49695--49743
18
2.7
18
81
12
64
63
0
10
26
1.26
49516--49753
87
2.7
88
84
8
295
63
0
10
25
1.31
51082--51543
35
13.0
35
85
4
570
41
20
13
25
1.88
51508--51616
54
2.0
54
94
0
191
33
22
18
25
1.97
52427--52458
16
2.1
15
94
5
55
0
21
0
78
0.76
55946--55971
4
6.5
4
100
0
52
76
0
0
23
0.78
59640--59696
21
2.7
21
69
0
51
10
33
14
42
1.79

Tables:   1

The End!