genome.fa.s17772.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017772.1 Corchorus olitorius cultivar O-4 contig17805, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90721

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272--328	21	2.7	21	69	0	51	10	33	14	42	1.79
4454--4517	28	2.3	27	83	2	74	60	1	10	26	1.39
4472--4716	46	5.5	45	80	10	206	62	0	10	26	1.32
4504--4613	27	4.4	27	69	23	78	61	0	9	28	1.32
4444--4726	46	6.4	42	75	16	156	62	0	10	25	1.33
4471--4726	85	3.0	83	78	14	259	62	0	10	26	1.32
4544--4737	42	4.4	43	88	5	257	61	0	11	26	1.30
4675--4723	25	1.9	25	87	4	71	63	0	10	26	1.26
10314--10411	37	2.6	37	86	1	124	32	19	16	31	1.94
10374--10466	28	3.5	28	68	11	95	34	17	16	32	1.92
12082--12210	36	3.6	35	91	5	197	37	17	15	29	1.90
12148--12207	20	3.2	20	63	18	56	33	15	16	35	1.90
13303--13333	16	1.9	16	93	0	53	61	6	3	29	1.37
18393--18448	20	2.8	20	88	0	85	39	25	10	25	1.87
18393--18457	20	3.2	20	84	6	78	40	23	12	24	1.89
18391--18805	202	2.1	202	94	0	742	40	23	10	26	1.86
18597--18650	20	2.7	20	91	0	90	44	24	7	24	1.79
28319--28344	11	2.4	11	100	0	52	15	0	0	84	0.62
29254--29344	27	3.4	27	84	0	110	17	18	26	37	1.93
40215--40460	129	1.9	129	94	1	431	31	25	23	20	1.98
40686--40772	36	2.4	36	88	3	122	35	16	29	18	1.92
45124--45149	2	13.0	2	100	0	52	0	0	50	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46727--46771	21	2.1	21	88	8	65	33	28	6	31	1.83
47983--48007	1	25.0	1	100	0	50	100	0	0	0	0.00
49393--49494	30	3.4	30	79	5	125	26	19	33	20	1.97
56784--57121	177	1.9	177	98	0	649	45	12	17	24	1.82
57455--57528	31	2.4	31	97	0	139	29	20	18	31	1.97
57525--57578	17	3.2	17	68	5	56	37	16	16	29	1.91
57542--57630	16	5.4	16	73	5	88	29	12	20	38	1.89
57524--57627	33	3.2	33	94	0	172	30	13	20	35	1.91
57892--57955	3	21.0	3	96	3	119	32	0	0	67	0.91
58610--58645	13	2.8	13	100	0	72	41	11	33	13	1.80
59087--59169	24	3.3	23	68	27	62	39	4	12	43	1.63
59065--59187	51	2.4	51	90	0	201	39	9	8	42	1.68
59090--59172	27	3.2	25	73	16	80	38	4	12	44	1.63
61639--61663	1	25.0	1	100	0	50	100	0	0	0	0.00
61954--62007	28	1.9	27	85	14	74	75	1	16	5	1.07
63729--63781	28	1.9	28	85	11	74	62	11	5	20	1.49
64219--64260	22	1.9	22	100	0	84	9	23	57	9	1.60
65699--65732	9	3.9	9	84	7	52	50	0	0	50	1.00
65698--65762	17	3.6	18	78	17	80	49	4	0	46	1.22
66033--66254	118	1.9	118	96	0	408	27	16	16	38	1.91
68658--68687	2	15.5	2	93	6	53	50	0	0	50	1.00
70497--71569	439	2.5	433	83	4	1305	42	12	14	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72220--72276	2	32.5	2	74	25	58	50	0	0	49	1.00
72214--72278	14	4.6	16	78	21	74	50	0	0	49	1.00
72216--72281	12	5.4	12	80	19	75	50	0	0	50	1.00
72213--72281	26	2.7	26	89	10	108	50	0	0	49	1.00
72213--72281	24	2.7	25	85	14	97	50	0	0	49	1.00
77427--77454	6	4.7	6	100	0	56	17	14	0	67	1.22
79328--79357	12	2.5	12	100	0	60	10	0	0	90	0.47
86011--86059	25	2.0	25	100	0	98	38	16	24	20	1.92
86433--86495	32	1.9	34	90	6	103	44	11	17	26	1.82

Tables:   1

The End!