Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017773.1 Corchorus olitorius cultivar O-4 contig17806, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45207

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
988--1038
18
2.9
18
88
8
70
49
0
1
49
1.12
1673--1709
11
3.1
12
92
7
58
59
24
10
5
1.52
1896--1988
42
2.2
42
90
1
141
34
31
13
20
1.92
4872--4906
10
3.5
10
92
0
52
85
0
11
2
0.69
5016--5210
46
4.2
46
91
2
282
36
24
29
10
1.88
5266--5416
68
2.3
67
90
2
232
41
17
23
17
1.90
8519--8613
44
2.1
44
96
1
172
34
29
12
23
1.92
8818--8910
42
2.2
42
90
1
141
35
30
12
21
1.91
10478--10560
43
1.9
43
95
0
148
46
2
19
31
1.62
15037--15099
26
2.4
26
97
0
117
36
6
22
34
1.80
25134--25184
13
4.2
12
78
12
50
43
5
7
43
1.57
25134--25190
12
4.7
13
79
12
59
38
5
8
47
1.57
33565--33592
13
2.2
13
100
0
56
35
7
35
21
1.81
37483--37529
22
2.2
22
88
3
69
25
2
8
63
1.34
37811--37890
34
2.5
33
92
8
137
25
5
21
48
1.70
40804--40855
19
2.4
23
79
20
60
32
13
15
38
1.86
42455--42491
19
1.9
19
88
0
56
16
10
10
62
1.55
42457--42505
19
2.9
16
75
18
55
16
10
10
63
1.52
44109--44180
26
2.7
27
80
4
74
22
13
23
40
1.90

Tables:   1

The End!