Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017775.1 Corchorus olitorius cultivar O-4 contig17808, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4587
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29


Found at i:1851 original size:22 final size:21

Alignment explanation


    Indices: 1821--1863  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1811 CCAAGTCATT

                     *            
       1821 ACCGCCCATTCACCGTGCCATC
          1 ACCGCCCATGC-CCGTGCCATC

                *                
       1843 ACCGGCCATGCCCGTGCCATC
          1 ACCGCCCATGCCCGTGCCATC

       1864 GCCATTTCAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21   10  0.53
  22    9  0.47

ACGTcount: A:0.16, C:0.49, G:0.19, T:0.16


Consensus pattern (21 bp):   
ACCGCCCATGCCCGTGCCATC
Done.