Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017783.1 Corchorus olitorius cultivar O-4 contig17816, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40878

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
315--356
20
2.1
20
82
8
50
40
16
7
35
1.76
3336--3384
21
2.4
20
83
6
62
48
8
18
24
1.75
3481--3552
27
2.6
27
82
6
92
41
27
15
15
1.87
3481--3548
28
2.5
28
83
7
86
44
25
14
16
1.85
8940--9038
49
2.0
49
94
0
171
30
21
10
38
1.86
9084--9113
13
2.3
13
94
0
51
30
16
0
53
1.44
9067--9166
49
2.0
49
100
0
200
34
18
2
46
1.60
9133--9162
13
2.3
13
94
0
51
30
16
0
53
1.44
13587--13648
30
2.1
30
90
0
97
48
4
22
24
1.70
13818--13911
41
2.4
40
85
8
122
28
18
19
34
1.95
16859--16946
3
29.3
3
100
0
176
32
0
0
67
0.91
17524--17565
17
2.5
17
78
21
52
33
21
26
19
1.97
20755--20794
19
2.2
19
90
4
64
32
20
2
45
1.64
21211--21262
21
2.5
21
75
12
61
15
23
7
53
1.67
29491--29531
17
2.4
17
100
0
82
26
4
29
39
1.77
35245--35296
21
2.6
21
84
6
72
25
5
21
48
1.72

Tables:   1

The End!