Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017785.1 Corchorus olitorius cultivar O-4 contig17818, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31526

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5095--5194
41
2.5
39
82
12
105
35
17
14
34
1.89
5178--5301
47
2.6
47
90
1
194
39
11
8
40
1.72
6478--6642
48
3.3
48
64
15
111
37
9
2
50
1.49
10432--10493
30
2.1
30
100
0
124
25
17
35
20
1.95
12175--12256
42
2.0
42
97
0
155
37
7
3
51
1.48
12384--12544
79
2.0
81
95
3
290
26
9
27
36
1.88
13009--13040
15
2.3
15
89
10
50
31
0
0
68
0.90
13119--13452
120
2.6
124
84
9
435
36
10
3
49
1.54
17057--17135
39
2.0
39
100
0
158
26
15
20
37
1.92
17938--17962
2
12.5
2
100
0
50
52
0
0
48
1.00
22157--22211
22
2.5
23
82
8
78
34
5
14
45
1.68
28085--28144
30
2.0
30
100
0
120
43
0
26
30
1.55
28477--28540
32
2.0
32
100
0
128
12
21
28
37
1.90
30824--31121
22
13.3
22
71
14
164
38
10
17
33
1.84
30907--31030
46
2.8
45
84
6
139
40
11
12
35
1.80
31166--31283
22
5.4
22
78
5
123
32
11
17
38
1.85
31166--31303
44
3.2
44
76
9
140
31
12
17
39
1.86
31166--31339
22
8.1
21
72
15
99
31
12
15
40
1.85

Tables:   1

The End!